Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5484g00042 ATGGAAGAGGATGACGAAGTCGTTTCGTGCTCTTCCGGTTCCGACGACGACGACGAGGACCTTTCCAGTGAATGTGAAGAGAGCCTCGATAAGGATGATCAGTCAGAGGTCGACGTTTATTCTCTATCTGATGACGAGAGGAAATCGAAGAATATCGATGCTCTTGTGAGGGGTAATCTTGTCGTGAAGACACAGTCGTTGCTTCCACGAGTTCTTTCTGTAACACAAGGAGCAGCTGTTTGTAGAAAACCCTTTAAACCTCCCAGCTCCAGTGGTTACAATAATGGAAATGAAGAGCTTACACGTCGCCTTTGTGCCCGGAAAAGGTTTGTCCCGTGGGGCTCTACCAGACCGGTGTTGGTGACAATTACCAACCGGTTAAATTTGCCAATAAGCGTTGAAAAAGATGTTGCCGCAGAGGAAGTGTCTTTGCCGCCTGGGATTGAACCTCTAGTGTTGTGGCAGCCCGAAGGGTATGAGGATGAAGGCCGTAATTTGACTCCAATAGCAGTGGACCCGTTGCTTGTTCGTTTCCTTAGACCACACCAGAGAGAAGGAGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTACTTAGCACAGCAAATATTCACGGGTGCATCCTGGCAGATGATATGGGTTTGGGGAAGACTTTGCAGTCAATCACACTTCTGTATACACTTCTCTGTCAAGGGTTTGATGGAAAGCCAATGGTTAGAAAAGCCATCATTGTGACCCCTACCAGCCTTGTAAGTAATTGGGAAGCTGAAATTAGGAAGTGGATCGGAGAGAGAGTTCGTCTTGTTGCTCTGTGTGAAAGTACAAGAGATGATGTCATTTCTGGGATTGACAATTTTACAAGTCCCCACAGCTCTCTACAGGTGCTCATAGCATCATATGAGACTTTCCGAATGCATTCATCAAAGTTTGGCCATAGTGACTCTTGTGACCTACTCATATGTGATGAGGCTCACAGGCTGAAGAATGATCAGACAATTACAAACCGGGCACTGGCTGCTCTCTCGTGCAAACGTAGAGTGTTGCTTTCAGGAACTCCTTTGCAGAATGACTTAGAGGAATTCTTTGCGATGGTTAACTTCACTAATCCTGGAATATTAGGTGACATTACACATTTTCGCCGGTACTTTGAGGGACCAATTATTTGTGGAAGAGAACCTACTGCTTCTGCAGATGAGAAGAAGCTAGGTGCTGATCGCTCTGCAGAGTTAAGTGGGAAAGTTAACCAGTTTATATTGCGAAGGACGAATGCATTATTATCAAATCACTTACCGCCAAAGATAGTTGAAGTTGTTTGCTGCAGGTTAACTCCACTCCAGTCAGACCTATATAAATATTTTATACAATCCAAAAATGTTAAACGCGCAATTGTTGAAGACGTAAAGCAATCAAAGATTTTAGCCTACATAACAGCTCTCAAAAAGTTGTGCAACCACCCAAAGCTTATATATGATACTATACGAAGCGGGAGTCCAGGAACTTCGGGCTTTGAGGACTGCATTCGGTTCTTTCCACCAGAGATGTTATCAGGAAGATCTGGCTCGTGGACTGGAGGGGATGGAGCTTGGATTGAGTTGTCAGGAAAAATGCATGTCTTAGCAAGACTACTTGCCCAGATACGGCAAAGGACTAATGACCGCATTGTCCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAGTTGTGTCGGGAACGAAGGTACCCGCACTTGAGGCTTGATGGTGCAACATCAATCAGTAAAAGGCAGAAGTTAGTAAACCGCTTTAATGATCAATCTAAGGACGAGTTCGTTTTTCTCTTGAGCAGTAAGGCTGGTGGCTGTGGCCTCAATTTAATTGGAGGAAATCGATTAGTCTTGTTCGATCCTGACTGGAATCCAGCAAATGATAAACAAGCTGCGGCGAGAGTTTGGAGGGATGGGCAGAAGAAAAGAGTGTACATTTATAGATTTTTGAGTGCTGGGACAATAGAGGAAAAGGTATACCAGCGTCAGATGTCAAAAGAAGGGCTTCAAAAGGTCATTCAGCAGGAGCAAACAGATAACCTTGAGACACCGGGTAACTTTTCGACAGAGGTCCTCCGGGATCTGTTCTCATTTCATGAATGTGTCAAGTCAGAGATTCATGAAAGGATGCATTGCTCTCGGTGTCAGACAAATGACGATGGGCCTCAGAGCGACGATGGGAAATATGTTGCTCATTCTACGATAAGTAACGGTGGATTTGATGAGGAAACCTCTGATGATATAGGTGGATTTGCAAAATTTGCAGGCTGTATGCACAAATTAAAGAAATCAGAAAAGCAGGTAGGGATCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTCTTCTCCACGACCGTACCGGATACTATCCTTCAGGCTTCAGCCGGAGATGAGGTGACATTTGTTTTTACAAACCAAGTTGATGGAAAGCTGACACCAATTGATTCAACCGTCAGTTCAGAGCAACAGCAAGAGGAAAGCAAGGAAGTGATCCAGCTAAAACGGAACTCCAAACAAAGTCCCGTTCTTTCTTTACATCAGAAGCCATCTTACTCCCTCAAGCCTTCAATGAGGCCAGCATTGAGTTCTGTTAGGACGAAGGAAAATATATCAACACAAGCAGCTTTAAAAACCAAAAATTCCCTTGTAAATCAATTACCACAGAAAAGATCATGTCCAACTTATGTTGATGTTGATCAATTAGAATAA 2742 0.4402 MEEDDEVVSCSSGSDDDDEDLSSECEESLDKDDQSEVDVYSLSDDERKSKNIDALVRGNLVVKTQSLLPRVLSVTQGAAVCRKPFKPPSSSGYNNGNEELTRRLCARKRFVPWGSTRPVLVTITNRLNLPISVEKDVAAEEVSLPPGIEPLVLWQPEGYEDEGRNLTPIAVDPLLVRFLRPHQREGVQFMFECVSGLLSTANIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIRKWIGERVRLVALCESTRDDVISGIDNFTSPHSSLQVLIASYETFRMHSSKFGHSDSCDLLICDEAHRLKNDQTITNRALAALSCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYFEGPIICGREPTASADEKKLGADRSAELSGKVNQFILRRTNALLSNHLPPKIVEVVCCRLTPLQSDLYKYFIQSKNVKRAIVEDVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGDGAWIELSGKMHVLARLLAQIRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGATSISKRQKLVNRFNDQSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNLETPGNFSTEVLRDLFSFHECVKSEIHERMHCSRCQTNDDGPQSDDGKYVAHSTISNGGFDEETSDDIGGFAKFAGCMHKLKKSEKQVGIPLEEDLGSWGHHFFSTTVPDTILQASAGDEVTFVFTNQVDGKLTPIDSTVSSEQQQEESKEVIQLKRNSKQSPVLSLHQKPSYSLKPSMRPALSSVRTKENISTQAALKTKNSLVNQLPQKRSCPTYVDVDQLE 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5484g00042 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 724 IPR027417 -
Pral5484g00042 913 CDD SF2_C_SNF 531 659 - -
Pral5484g00042 913 PANTHER SNF2/RAD54 FAMILY MEMBER 18 845 - -
Pral5484g00042 913 CDD DEXHc_RAD54 179 420 - -
Pral5484g00042 913 SMART helicmild6 564 648 IPR001650 -
Pral5484g00042 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 420 IPR027417 -
Pral5484g00042 913 Pfam SNF2-related domain 182 488 IPR000330 GO:0005524|GO:0140658
Pral5484g00042 913 Gene3D - 155 419 IPR038718 -
Pral5484g00042 913 MobiDBLite consensus disorder prediction 860 879 - -
Pral5484g00042 913 FunFam Predicted protein 442 516 - -
Pral5484g00042 913 Pfam Helicase conserved C-terminal domain 538 647 IPR001650 -
Pral5484g00042 913 Gene3D - 420 728 IPR027417 -
Pral5484g00042 913 FunFam DNA repair and recombination protein RAD54-like 526 696 - -
Pral5484g00042 913 MobiDBLite consensus disorder prediction 1 33 - -
Pral5484g00042 913 FunFam DNA repair and recombination protein RAD54 150 419 - -
Pral5484g00042 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 370 IPR014001 -
Pral5484g00042 913 MobiDBLite consensus disorder prediction 1 43 - -
Pral5484g00042 913 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 537 694 IPR001650 -
Pral5484g00042 913 Gene3D - 442 710 - -
Pral5484g00042 913 SMART ultradead3 175 378 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5484g00042 Pral-Chr5484 317678 325085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5484g00042 205 668 RAD5 or RAD16-like Gene Family AT3G16600 24.197 1.10e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5484g00042 SNF2_N 1.4e-52 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5484g00042 K10875 - qsa:O6P43_011711 1368.99