Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral5484g00042 | ATGGAAGAGGATGACGAAGTCGTTTCGTGCTCTTCCGGTTCCGACGACGACGACGAGGACCTTTCCAGTGAATGTGAAGAGAGCCTCGATAAGGATGATCAGTCAGAGGTCGACGTTTATTCTCTATCTGATGACGAGAGGAAATCGAAGAATATCGATGCTCTTGTGAGGGGTAATCTTGTCGTGAAGACACAGTCGTTGCTTCCACGAGTTCTTTCTGTAACACAAGGAGCAGCTGTTTGTAGAAAACCCTTTAAACCTCCCAGCTCCAGTGGTTACAATAATGGAAATGAAGAGCTTACACGTCGCCTTTGTGCCCGGAAAAGGTTTGTCCCGTGGGGCTCTACCAGACCGGTGTTGGTGACAATTACCAACCGGTTAAATTTGCCAATAAGCGTTGAAAAAGATGTTGCCGCAGAGGAAGTGTCTTTGCCGCCTGGGATTGAACCTCTAGTGTTGTGGCAGCCCGAAGGGTATGAGGATGAAGGCCGTAATTTGACTCCAATAGCAGTGGACCCGTTGCTTGTTCGTTTCCTTAGACCACACCAGAGAGAAGGAGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTACTTAGCACAGCAAATATTCACGGGTGCATCCTGGCAGATGATATGGGTTTGGGGAAGACTTTGCAGTCAATCACACTTCTGTATACACTTCTCTGTCAAGGGTTTGATGGAAAGCCAATGGTTAGAAAAGCCATCATTGTGACCCCTACCAGCCTTGTAAGTAATTGGGAAGCTGAAATTAGGAAGTGGATCGGAGAGAGAGTTCGTCTTGTTGCTCTGTGTGAAAGTACAAGAGATGATGTCATTTCTGGGATTGACAATTTTACAAGTCCCCACAGCTCTCTACAGGTGCTCATAGCATCATATGAGACTTTCCGAATGCATTCATCAAAGTTTGGCCATAGTGACTCTTGTGACCTACTCATATGTGATGAGGCTCACAGGCTGAAGAATGATCAGACAATTACAAACCGGGCACTGGCTGCTCTCTCGTGCAAACGTAGAGTGTTGCTTTCAGGAACTCCTTTGCAGAATGACTTAGAGGAATTCTTTGCGATGGTTAACTTCACTAATCCTGGAATATTAGGTGACATTACACATTTTCGCCGGTACTTTGAGGGACCAATTATTTGTGGAAGAGAACCTACTGCTTCTGCAGATGAGAAGAAGCTAGGTGCTGATCGCTCTGCAGAGTTAAGTGGGAAAGTTAACCAGTTTATATTGCGAAGGACGAATGCATTATTATCAAATCACTTACCGCCAAAGATAGTTGAAGTTGTTTGCTGCAGGTTAACTCCACTCCAGTCAGACCTATATAAATATTTTATACAATCCAAAAATGTTAAACGCGCAATTGTTGAAGACGTAAAGCAATCAAAGATTTTAGCCTACATAACAGCTCTCAAAAAGTTGTGCAACCACCCAAAGCTTATATATGATACTATACGAAGCGGGAGTCCAGGAACTTCGGGCTTTGAGGACTGCATTCGGTTCTTTCCACCAGAGATGTTATCAGGAAGATCTGGCTCGTGGACTGGAGGGGATGGAGCTTGGATTGAGTTGTCAGGAAAAATGCATGTCTTAGCAAGACTACTTGCCCAGATACGGCAAAGGACTAATGACCGCATTGTCCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAGTTGTGTCGGGAACGAAGGTACCCGCACTTGAGGCTTGATGGTGCAACATCAATCAGTAAAAGGCAGAAGTTAGTAAACCGCTTTAATGATCAATCTAAGGACGAGTTCGTTTTTCTCTTGAGCAGTAAGGCTGGTGGCTGTGGCCTCAATTTAATTGGAGGAAATCGATTAGTCTTGTTCGATCCTGACTGGAATCCAGCAAATGATAAACAAGCTGCGGCGAGAGTTTGGAGGGATGGGCAGAAGAAAAGAGTGTACATTTATAGATTTTTGAGTGCTGGGACAATAGAGGAAAAGGTATACCAGCGTCAGATGTCAAAAGAAGGGCTTCAAAAGGTCATTCAGCAGGAGCAAACAGATAACCTTGAGACACCGGGTAACTTTTCGACAGAGGTCCTCCGGGATCTGTTCTCATTTCATGAATGTGTCAAGTCAGAGATTCATGAAAGGATGCATTGCTCTCGGTGTCAGACAAATGACGATGGGCCTCAGAGCGACGATGGGAAATATGTTGCTCATTCTACGATAAGTAACGGTGGATTTGATGAGGAAACCTCTGATGATATAGGTGGATTTGCAAAATTTGCAGGCTGTATGCACAAATTAAAGAAATCAGAAAAGCAGGTAGGGATCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTCTTCTCCACGACCGTACCGGATACTATCCTTCAGGCTTCAGCCGGAGATGAGGTGACATTTGTTTTTACAAACCAAGTTGATGGAAAGCTGACACCAATTGATTCAACCGTCAGTTCAGAGCAACAGCAAGAGGAAAGCAAGGAAGTGATCCAGCTAAAACGGAACTCCAAACAAAGTCCCGTTCTTTCTTTACATCAGAAGCCATCTTACTCCCTCAAGCCTTCAATGAGGCCAGCATTGAGTTCTGTTAGGACGAAGGAAAATATATCAACACAAGCAGCTTTAAAAACCAAAAATTCCCTTGTAAATCAATTACCACAGAAAAGATCATGTCCAACTTATGTTGATGTTGATCAATTAGAATAA | 2742 | 0.4402 | MEEDDEVVSCSSGSDDDDEDLSSECEESLDKDDQSEVDVYSLSDDERKSKNIDALVRGNLVVKTQSLLPRVLSVTQGAAVCRKPFKPPSSSGYNNGNEELTRRLCARKRFVPWGSTRPVLVTITNRLNLPISVEKDVAAEEVSLPPGIEPLVLWQPEGYEDEGRNLTPIAVDPLLVRFLRPHQREGVQFMFECVSGLLSTANIHGCILADDMGLGKTLQSITLLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIRKWIGERVRLVALCESTRDDVISGIDNFTSPHSSLQVLIASYETFRMHSSKFGHSDSCDLLICDEAHRLKNDQTITNRALAALSCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDITHFRRYFEGPIICGREPTASADEKKLGADRSAELSGKVNQFILRRTNALLSNHLPPKIVEVVCCRLTPLQSDLYKYFIQSKNVKRAIVEDVKQSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGDGAWIELSGKMHVLARLLAQIRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGATSISKRQKLVNRFNDQSKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNLETPGNFSTEVLRDLFSFHECVKSEIHERMHCSRCQTNDDGPQSDDGKYVAHSTISNGGFDEETSDDIGGFAKFAGCMHKLKKSEKQVGIPLEEDLGSWGHHFFSTTVPDTILQASAGDEVTFVFTNQVDGKLTPIDSTVSSEQQQEESKEVIQLKRNSKQSPVLSLHQKPSYSLKPSMRPALSSVRTKENISTQAALKTKNSLVNQLPQKRSCPTYVDVDQLE | 913 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral5484g00042 | 913 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 424 | 724 | IPR027417 | - | |
Pral5484g00042 | 913 | CDD | SF2_C_SNF | 531 | 659 | - | - | |
Pral5484g00042 | 913 | PANTHER | SNF2/RAD54 FAMILY MEMBER | 18 | 845 | - | - | |
Pral5484g00042 | 913 | CDD | DEXHc_RAD54 | 179 | 420 | - | - | |
Pral5484g00042 | 913 | SMART | helicmild6 | 564 | 648 | IPR001650 | - | |
Pral5484g00042 | 913 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 165 | 420 | IPR027417 | - | |
Pral5484g00042 | 913 | Pfam | SNF2-related domain | 182 | 488 | IPR000330 | GO:0005524|GO:0140658 | |
Pral5484g00042 | 913 | Gene3D | - | 155 | 419 | IPR038718 | - | |
Pral5484g00042 | 913 | MobiDBLite | consensus disorder prediction | 860 | 879 | - | - | |
Pral5484g00042 | 913 | FunFam | Predicted protein | 442 | 516 | - | - | |
Pral5484g00042 | 913 | Pfam | Helicase conserved C-terminal domain | 538 | 647 | IPR001650 | - | |
Pral5484g00042 | 913 | Gene3D | - | 420 | 728 | IPR027417 | - | |
Pral5484g00042 | 913 | FunFam | DNA repair and recombination protein RAD54-like | 526 | 696 | - | - | |
Pral5484g00042 | 913 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Pral5484g00042 | 913 | FunFam | DNA repair and recombination protein RAD54 | 150 | 419 | - | - | |
Pral5484g00042 | 913 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 197 | 370 | IPR014001 | - | |
Pral5484g00042 | 913 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Pral5484g00042 | 913 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 537 | 694 | IPR001650 | - | |
Pral5484g00042 | 913 | Gene3D | - | 442 | 710 | - | - | |
Pral5484g00042 | 913 | SMART | ultradead3 | 175 | 378 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral5484g00042 | Pral-Chr5484 | 317678 | 325085 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral5484g00042 | 205 | 668 | RAD5 or RAD16-like Gene Family | AT3G16600 | 24.197 | 1.10e-23 | 105 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Pral5484g00042 | SNF2_N | 1.4e-52 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral5484g00042 | K10875 | - | qsa:O6P43_011711 | 1368.99 |