Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5484g00038 ATGGTGGTTTCTAAGTTAACATACGAGGAATGCAGGCGACGACGGCTAGAAGAAAACAAGAAGAGAATGGAGGAGCTAAACCTCAACAAGCTTGCTAGTGCTTTGAAGCCTTTGCCATCACCTAAGTCTTCCCCTGCCAAGCCTAGGGTGGCACGTCAGCCGGTAAGTCTTTCTTCGGCCCCAGTAAGAAGGTCTAGTCGCGTAGCCAGCTTACCTCCTCCAAACTACAAGGAAGGCCCCATTGAACCTTTGCTGAGACCAAGAAGGTCCTATCCGAAAAGGGACTTGCTAAATCGAGTTTATGCTTCAGATGAAGTTAGGCAATATGCAATTGATAGAGCCGAAGAACTTCTCTCTGGTTTAGATTCTAAATACCCAAGTTTCATCAAGCCTATGCTCCAATCACATGTCACTGGAGGATTTTGGCTTGGTCTTCCAGTTCATTTCTGCAAAACTTATCTTCCTCACCATGATGAAACAATAACTCTAATAGATGAGGATAGGAACAAGTCTCCTACCAAATACCTTGCTGATAAAACTGGTCTTAGTGGTGGTTGGCGAGGTTTCTCAATTGATCATGAACTAGTTGATGGGGATGCATTGGTGTTTCAACTCATCAAACCCACAGAATTTAAGGTGTTCATAATTAGAGCATATAAATCAGAAAACAAAGAGGAAGGAGATGAAGATTTGGATGCTTCACACTTGAACAGGAGCTCCAAAAGAGTCAGAGCAAGCACAAGGTAG 747 0.4364 MVVSKLTYEECRRRRLEENKKRMEELNLNKLASALKPLPSPKSSPAKPRVARQPVSLSSAPVRRSSRVASLPPPNYKEGPIEPLLRPRRSYPKRDLLNRVYASDEVRQYAIDRAEELLSGLDSKYPSFIKPMLQSHVTGGFWLGLPVHFCKTYLPHHDETITLIDEDRNKSPTKYLADKTGLSGGWRGFSIDHELVDGDALVFQLIKPTEFKVFIIRAYKSENKEEGDEDLDASHLNRSSKRVRASTR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5484g00038 248 MobiDBLite consensus disorder prediction 224 239 - -
Pral5484g00038 248 MobiDBLite consensus disorder prediction 32 87 - -
Pral5484g00038 248 SMART B3_2 128 220 IPR003340 GO:0003677
Pral5484g00038 248 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 50 223 IPR044837 -
Pral5484g00038 248 MobiDBLite consensus disorder prediction 224 248 - -
Pral5484g00038 248 Gene3D - 104 220 IPR015300 -
Pral5484g00038 248 Coils Coil 6 26 - -
Pral5484g00038 248 SUPERFAMILY DNA-binding pseudobarrel domain 121 217 IPR015300 -
Pral5484g00038 248 CDD B3_DNA 126 217 IPR003340 GO:0003677
Pral5484g00038 248 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Pral5484g00038 248 Pfam B3 DNA binding domain 128 215 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5484g00038 Pral-Chr5484 297003 299151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5484g00038 1 240 B3 DNA Binding Superfamily AT3G19184 60.000 1.01e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral5484g00038 B3 3.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5484g00038 - - pcin:129293089 435.261