Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5484g00029 ATGGGAGTTTGTGTCTCTAAGCCCCAGAAGCCGAACCCATACGGGGTTAGGCAAACAGAAGAAGACCATGATCGGTATGAAGATTCTTCTCAAGTCCCAAAATCCCCGCTTTCTCCCATCGCCAACAACTACAATCGGAAAGATGACGTCACGACCGGGAAGCAGTCTCCGTTCTTCCCCTTCTACAGTCCCAGTCCAGCTCATTTTCTGAAAAATTCTCCGGTGTCGACGCCGGGGGCGAGCAAGAGCGCGAGTTCGACTCCAAGGAGGTTCTTCCGGAGGCCTTTTCCTCCGCCGTCGCCGGCCAAGCACATAAAGGCTTTGCTGGCGAAGAGGCAGGGGAGGAAGGCAGCGACAGCGATACCCGAAGAGGGGGAGGAAGAAGAATCGAGAGATTTGGACAAGAGGTTTGGTTTTTCGAAGGAGCTCACCAGTAGATTGGAGGTTGGGGAAGAGGTAGGCAGAGGACATTTTGGTTATACATGCTCTGCTAGGTTCAAGAAAGGTGAACGTAAGGGTCAGCAAGTGGCGGTGAAGGTCATTCCTAAATCTAAGATGACAACGGCAATTGCAATTGAAGATGTTAGAAGGGAGGTGAAAATATTACGAGCCTTAACTGGACACAATAATCTGGTGCAATTCTATGATGCATTTGAAGACCAAGATAATGTCTACATTGTAATGGAGTTATGTGAAGGAGGCGAGCTGTTAGATAGAATACTTTCAAGAGGTGGGAAATACTCAGAAGATGACGCAAAAGCTGTCTTGATACAAATATTGAATGTTGTTGCGTTCTGTCATCTTCAGGGTGTGGTGCACAGAGATCTTAAGCCAGAGAATTTTTTGTATGTGTCAAAGGATGAGAATGCTGAATTAAAAGCTATTGACTTTGGATTATCAGACTTTGTCAAACCAGATGAAAGGCTCAATGATATTGTGGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGATCTTACAGTACAGAAGCTGATGTGTGGAGTATCGGCGTGATAGCTTATATTCTCTTATGTGGTAGTCGTCCATTTTGGGCACGAACAGAGTCTGGTATATTTAGGGCTGTTCTGAAAGCTGATCCAAGCTTTGATGAACCTCCTTGGCCGTCCTTATCTTCAGAAGCAAGAGATTTTGTTAAGCGCCTGTTGAATAAGGACCCAAGGAAGCGAATATCAGCTGCCCAGGCTCTAAGTCATCCTTGGATTAGGAATTTCAACAATGTAAAAGTTCCTCTTGATATTTTAATATTTAAGCTCATGAAGGCCTATATGCGATCATCATCCTTGCGCAAGGCTTCTTTAAGGGCGTTGTCAAAGACATTGACTGCTGATGAGCTCTATTATTTGAAGGAGCAATTTGCTCTGCTGGAGCCAAGCAAAAATGGCAGCATAACATTAGAAAACATCAGCATGGCGCTGAGGAAACACGCAACAGATGCCATGAAAGAGTCCCACATTTCTGACTTTATGGCCTCGCTAAACTCATTACAATATAGAAGAATGGGTTTTGAAGAATTTTGTGCGGCTGCATTAAGTGTGTATCAGCTTGAAGCCCTTGATCGCTGGGAACAACATGCACGCTGTGCATATGAAATTTTTGAGAAAGATGGAAACAGAGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGCCCTTCTATCCCTGTTCATGTTGTACTTGTCGATTGGATAAGGCACACTGATGGGAAGCTAAGCTTTCTTGGGTTTGTCAAATTGTTACATGGTGTATCTGGCAGAACTCTTTCAAAGGTGCAATAG 1806 0.4452 MGVCVSKPQKPNPYGVRQTEEDHDRYEDSSQVPKSPLSPIANNYNRKDDVTTGKQSPFFPFYSPSPAHFLKNSPVSTPGASKSASSTPRRFFRRPFPPPSPAKHIKALLAKRQGRKAATAIPEEGEEEESRDLDKRFGFSKELTSRLEVGEEVGRGHFGYTCSARFKKGERKGQQVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHNNLVQFYDAFEDQDNVYIVMELCEGGELLDRILSRGGKYSEDDAKAVLIQILNVVAFCHLQGVVHRDLKPENFLYVSKDENAELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEPPWPSLSSEARDFVKRLLNKDPRKRISAAQALSHPWIRNFNNVKVPLDILIFKLMKAYMRSSSLRKASLRALSKTLTADELYYLKEQFALLEPSKNGSITLENISMALRKHATDAMKESHISDFMASLNSLQYRRMGFEEFCAAALSVYQLEALDRWEQHARCAYEIFEKDGNRAIVIEELASELGLGPSIPVHVVLVDWIRHTDGKLSFLGFVKLLHGVSGRTLSKVQ 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5484g00029 601 PANTHER SERINE/THREONINE-PROTEIN KINASE 132 569 - -
Pral5484g00029 601 MobiDBLite consensus disorder prediction 1 98 - -
Pral5484g00029 601 MobiDBLite consensus disorder prediction 117 133 - -
Pral5484g00029 601 Pfam Protein kinase domain 148 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5484g00029 601 MobiDBLite consensus disorder prediction 114 133 - -
Pral5484g00029 601 MobiDBLite consensus disorder prediction 69 88 - -
Pral5484g00029 601 FunFam CDPK-related kinase 1 140 235 - -
Pral5484g00029 601 ProSitePatterns Protein kinases ATP-binding region signature. 153 179 IPR017441 GO:0005524
Pral5484g00029 601 Gene3D Transferase(Phosphotransferase) domain 1 237 432 - -
Pral5484g00029 601 Gene3D Phosphorylase Kinase; domain 1 149 236 - -
Pral5484g00029 601 SMART serkin_6 147 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5484g00029 601 SUPERFAMILY Protein kinase-like (PK-like) 143 446 IPR011009 -
Pral5484g00029 601 FunFam Calcium-dependent protein kinase SK5 319 413 - -
Pral5484g00029 601 SUPERFAMILY EF-hand 441 590 IPR011992 -
Pral5484g00029 601 MobiDBLite consensus disorder prediction 16 30 - -
Pral5484g00029 601 FunFam CDPK-related kinase 1 445 518 - -
Pral5484g00029 601 Gene3D - 433 591 - -
Pral5484g00029 601 FunFam CDPK-related kinase 3 139 311 - -
Pral5484g00029 601 CDD STKc_CAMK 148 408 - -
Pral5484g00029 601 ProSiteProfiles Protein kinase domain profile. 147 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5484g00029 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Pral5484g00029 601 MobiDBLite consensus disorder prediction 31 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5484g00029 Pral-Chr5484 205937 210999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5484g00029 1 597 EF-hand Containing Proteins AT3G50530 69.876 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pral5484g00029 Pkinase 6.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5484g00029 K13412 - gmx:100798913 993.416