Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5484g00027 | ATGGGGAGACCAAGGTGCTTCTTGGACATTAGCATAGGAGATGAACTTGAAGGCAGGATTGTGATTGAGCTTTACAACGACGTCGCTCCCAAAACTGCTGAGAATTTCAGGGCTCTTTGTACCGGTGAGAAGGGCATTGGTCCCAACACTGGTGTGCCCCTCCATTTCAAGGGGTCTTGCTTTCATCGTGTTATTAAAGGCTTTATGATCCAAGGAGGAGATATATCCGCTGGAGATGGTACTGGAGGAGAATCTATTTATGGATTAAAGTTTGAAGATGAGAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGCTGTCTATGGCCAATGCTGGTCCTGACACAAACGGGTCTCAGTTTTTCATAACTACAACCCGGACATCGCATCTTGATGGCAAGCATGTTGTATTTGGGAAGGTAGTCAAAGGAATGGGGGTGGTCCGATCGATTGAGCATGTGACAACTGGTGACAACGACCGCCCCACTCTAGATGTTAAAATCGTGGATTGTGGAGAAATCCCTCAAGGAACAGATGACGGAATATCCAACTTTTTCAAAGACGGTGATACTTTTCCTGATTGGCCAGCTGACCTTGATGAGAGCCCTAGTGAACTTCAATGGTGGATGAATGCTGTAGACTCCATTAAATCTTTTGGTAATGAATACTACAAGAAACAAGACTATAAAATGGCTCTCAGGAAGTATCGGAAGGCTTTACGCTACCTGGATACTTGCTGGGAGAAGGAAGGGATTGATGAAGAGTTGAGTTTAAGTTTGAGAAAAACGAAGTCTCAGGTTTTTACAAACAGCTCTGCTTGCAAACTAAAATTGGGGGATCTCAAAGGAGCATTGCTAGATACAGAATTTGCTATGCGTGACGGAGACAACAATGTCAAGGCCTTGTTCCGTCAAGGACAGGCATACATGGCACTTAATGATGTTGATGCCGCGGTTGAAAGCTTTAAGAAGGCATTGGTATTGGAGCCAAATGACGGTAAGCTGAAACTTGCTGCTGCCAGGAAGAAGATTGCTGAGAGGCGTGATCGGGAGAAAAAGGCATACAGCAAGATGTTCCAATAA | 1080 | 0.4454 | MGRPRCFLDISIGDELEGRIVIELYNDVAPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANAGPDTNGSQFFITTTRTSHLDGKHVVFGKVVKGMGVVRSIEHVTTGDNDRPTLDVKIVDCGEIPQGTDDGISNFFKDGDTFPDWPADLDESPSELQWWMNAVDSIKSFGNEYYKKQDYKMALRKYRKALRYLDTCWEKEGIDEELSLSLRKTKSQVFTNSSACKLKLGDLKGALLDTEFAMRDGDNNVKALFRQGQAYMALNDVDAAVESFKKALVLEPNDGKLKLAAARKKIAERRDREKKAYSKMFQ | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5484g00027 | 359 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 5 | 173 | - | - | |
| Pral5484g00027 | 359 | ProSiteProfiles | TPR repeat profile. | 298 | 331 | IPR019734 | GO:0005515 | |
| Pral5484g00027 | 359 | FunFam | Peptidyl-prolyl cis-trans isomerase D | 1 | 178 | - | - | |
| Pral5484g00027 | 359 | SUPERFAMILY | Cyclophilin-like | 3 | 175 | IPR029000 | - | |
| Pral5484g00027 | 359 | FunFam | peptidyl-prolyl cis-trans isomerase D | 210 | 359 | - | - | |
| Pral5484g00027 | 359 | ProSiteProfiles | TPR repeat region circular profile. | 298 | 331 | - | - | |
| Pral5484g00027 | 359 | SUPERFAMILY | TPR-like | 208 | 341 | IPR011990 | GO:0005515 | |
| Pral5484g00027 | 359 | CDD | cyclophilin_ABH_like | 4 | 171 | - | - | |
| Pral5484g00027 | 359 | Gene3D | - | 1 | 179 | IPR029000 | - | |
| Pral5484g00027 | 359 | ProSitePatterns | Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. | 56 | 73 | IPR020892 | GO:0003755|GO:0006457 | |
| Pral5484g00027 | 359 | ProSiteProfiles | TPR repeat profile. | 212 | 245 | IPR019734 | GO:0005515 | |
| Pral5484g00027 | 359 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 61 | 73 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral5484g00027 | 359 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 119 | 131 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral5484g00027 | 359 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 104 | 119 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral5484g00027 | 359 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 132 | 147 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral5484g00027 | 359 | PRINTS | Cyclophilin peptidyl-prolyl cis-trans isomerase signature | 24 | 39 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral5484g00027 | 359 | Pfam | Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD | 8 | 171 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral5484g00027 | 359 | ProSiteProfiles | Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. | 7 | 172 | IPR002130 | GO:0000413|GO:0003755 | |
| Pral5484g00027 | 359 | Pfam | Tetratricopeptide repeat | 298 | 331 | IPR001440 | GO:0005515 | |
| Pral5484g00027 | 359 | Gene3D | Tetratricopeptide repeat domain | 208 | 359 | IPR011990 | GO:0005515 | |
| Pral5484g00027 | 359 | SMART | tpr_5 | 212 | 245 | IPR019734 | GO:0005515 | |
| Pral5484g00027 | 359 | SMART | tpr_5 | 298 | 331 | IPR019734 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5484g00027 | Pral-Chr5484 | 190730 | 194800 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5484g00027 | 17 | 170 | U-box Gene Family | AT5G67530 | 45.806 | 1.34e-36 | 137 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5484g00027 | K05864 | - | gmx:100804110 | 636.336 |