Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5484g00023 ATGGGTTCGGTTCCTCCAGAACTGAGCTTGGATTTGAGACCCACTTTTGTTCCCAAGACGATCAGTGATTTTCTCTACGAGGTTTCCACGATCGGAAACGCCGCCGACAAGTTGTCGAGGTTCGATGAGTTTCTCAAGAGATTGGAAGAGGAAATGAGGAAGATCGACGCTTTTAAGCGTGAGCTTCCTCTTTGCATGCTCCTCTTAAATGATGCAATCTTGACTCTGAAGGAGGAATCAGCAAAACTCAGGACTCCTATTTCTCAGCCAGTGCTGGAAGTATTTATTCCCTTGACGAAAGAATGTGATCAGAAAAAGGATGATAAGAAAGAAAAGGAATGCAGAGATAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAATACCGATAATCATCCCACTACTAACAACCATGCTTATGAGCAAAGACAACACTGTGAATTAGAAAACAAGAAATGCGAAGAGGAAGGACAATCTCTGCCTGAGGACCTATTCCAATCTCGTAGAAACGGTAATAGTGGGTGCAGGGCGTTCTTTCCTTTCTCAACCTACCCTAGCATCCCTGCGACACCAATGACAACAAAGGAAGGAAAGGAAGACTCCATTAATGGTCTCTCTCTTCTGACTCCCGGTACTAAAAATTTGAGGGAAGGTTCTGGTTCAAGTGGATCGAGAAGTAGCTCTAGCAGAGCAGTTTCTTCCTCGACTCCCAGTTCACAGCCAATTATGCCCACAGGTCATCAGCAGCCACAGAAGCAAGTTGCCCGGAAACAGAGGAGGTGCTGGTCACCGGAGCTGCATCGACGATTTGTCAATGCATTACAGCAACTTGGAGGTTCTCTAGCGGCAACCCCAAAACAAATAAGAGAACTCATGCAAGTTGATGGCCTGACCAACGATGAAGTGAAGAGTCATTTACAAAAATATCGACTTCACACGCGAAGAACACCGGCTAACACGGCTTCACCCGCTAATCAGTCTGTGGTTCTCGGAGGCTTGTGGATGTCCCCAGATCAGCACAATGAATCCTCCAAGGCTAGCAGTTCTGGGTCTGGTTCTCCTCAAGGTCCCCTCCAGTTAGCCGCATCCGGTGGAGGGATGTCTCGAACTGAAGGCGACAGCATAGAAGATGATGAAGATGAAAAATCTGAGAGCTTTAGCTGGAAAAGTCACATTCACAAACCTGGAAAAGATGTATAG 1200 0.4642 MGSVPPELSLDLRPTFVPKTISDFLYEVSTIGNAADKLSRFDEFLKRLEEEMRKIDAFKRELPLCMLLLNDAILTLKEESAKLRTPISQPVLEVFIPLTKECDQKKDDKKEKECRDKKNWMSSVQLWNTDNHPTTNNHAYEQRQHCELENKKCEEEGQSLPEDLFQSRRNGNSGCRAFFPFSTYPSIPATPMTTKEGKEDSINGLSLLTPGTKNLREGSGSSGSRSSSSRAVSSSTPSSQPIMPTGHQQPQKQVARKQRRCWSPELHRRFVNALQQLGGSLAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRTPANTASPANQSVVLGGLWMSPDQHNESSKASSSGSGSPQGPLQLAASGGGMSRTEGDSIEDDEDEKSESFSWKSHIHKPGKDV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5484g00023 399 MobiDBLite consensus disorder prediction 334 399 - -
Pral5484g00023 399 Gene3D - 256 314 - -
Pral5484g00023 399 Coils Coil 41 61 - -
Pral5484g00023 399 FunFam Myb family transcription factor 256 314 - -
Pral5484g00023 399 MobiDBLite consensus disorder prediction 382 399 - -
Pral5484g00023 399 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 256 314 IPR017930 -
Pral5484g00023 399 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 389 IPR044787 GO:0003700|GO:0006355
Pral5484g00023 399 SUPERFAMILY Homeodomain-like 255 315 IPR009057 -
Pral5484g00023 399 MobiDBLite consensus disorder prediction 186 260 - -
Pral5484g00023 399 MobiDBLite consensus disorder prediction 337 358 - -
Pral5484g00023 399 MobiDBLite consensus disorder prediction 186 256 - -
Pral5484g00023 399 Pfam Myb-like DNA-binding domain 259 310 IPR001005 -
Pral5484g00023 399 NCBIfam myb-like DNA-binding domain, SHAQKYF class 257 312 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5484g00023 Pral-Chr5484 165297 167961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5484g00023 7 338 G2-like Transcription Factor Family AT2G03500 38.418 1.89e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral5484g00023 Myb_DNA-binding 8.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5484g00023 - - qsa:O6P43_011684 462.611