Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5484g00015 ATGCCGCGTCCTTGTTTTCACAAGCTTGTTCTTCCATCCACCGTCCAAGCCGGTCAACTGAGGGTTCCAGATTATTTTTTGAGGAAATTTGGGGGGGAGCTCTCTACAATTGCTACCCTTAGTGTTCCTGATGGCAGTGTCTGGCGTATTTGTATAAAAAAGGTAGACAACAACTTTTGGCTCCATGATGGGTGGAAGGAGTTTGTTCAACGTTACTCCATTGGTGTTGGATGCTTTTTGGTGTTCAGATATGAAGGGAATTCATCTTTCAATGTTCATATTTTCAACTTGGCTGCTTCTGAGATAAACTATCAATTAGCCAATCGAAATAGTGATGAACGGCCTTACTTTTCCAACCAACATATTTTTGAGGAAATGGAAGATGAAGATTCCATAGAATACTCGGATTCAACACCTTCACATTTAACCCCTGGTGCATTTAATAACAAGGTTATTGCTGGATCTGCAGATCAATTGACACCTGGCAAGAATTATACTCCTTCACCATTGCAGAATTTGTTTAATGGGTCTAAACTTAATAGCATAAACTGGGGAGACACCATATCTTCAAAGGGTGCCAATTCACAAAACAATCAATTGACCAGAGATAAAGGTGTTCAGTTCAATGCAGCTGAGTTTAAAAGGTCTACTGAAGAGTTGAAATTGCGCGCTTCCAATAATGAAACGCAGAGAGTTAAAAAAACTGTAAGAAAAAGACGGAAAACTGATCCTAATGGTGAAGAATCCTCTCCTCATCATGAAGAGGAGGTAGAAATGCGTTTTAGATTTTATGAAAGTGCTTCTGCGAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTGTTAATGCTGCAAAAGCATATGAACCGCCTAATCCTTTTTGTAGAGTTGTCCTGCGGCCTTCCTACCTGTATAGGGGATGCATAATGTATTTGCCTTCTTGCTTTGCAGAAAAGCATCTGAATGGGGTTTCAGGTTTCATCAAACTCCAGATTACTGAGGGGAGACAGTGGCCGGTTCGCTGTCTTTATAGAGGGGGCAGAGCGAAGTTAAGCCAGGGCTGGTTCGAATTCGCCCAGGATAACAACCTTGGGGAAGGCGATGTCTGTGTATTTGAGCTGCTTAGAATGAGGGAAGTGGTGCTGAAGGTTACTATATTCCAAGTCCTCGAAGAAGATGTGGGATTGTTGAACCCTCCCATGCAGCAAAACCAAAGCATGAGCCCAACCTCAAAATTGTTGAACAGTCCCTTGCAGCAAGATGTGAGCCCCATTAAAATGATTAGAAATTAG 1296 0.4198 MPRPCFHKLVLPSTVQAGQLRVPDYFLRKFGGELSTIATLSVPDGSVWRICIKKVDNNFWLHDGWKEFVQRYSIGVGCFLVFRYEGNSSFNVHIFNLAASEINYQLANRNSDERPYFSNQHIFEEMEDEDSIEYSDSTPSHLTPGAFNNKVIAGSADQLTPGKNYTPSPLQNLFNGSKLNSINWGDTISSKGANSQNNQLTRDKGVQFNAAEFKRSTEELKLRASNNETQRVKKTVRKRRKTDPNGEESSPHHEEEVEMRFRFYESASARKRTVTAEERERAVNAAKAYEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQITEGRQWPVRCLYRGGRAKLSQGWFEFAQDNNLGEGDVCVFELLRMREVVLKVTIFQVLEEDVGLLNPPMQQNQSMSPTSKLLNSPLQQDVSPIKMIRN 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5484g00015 431 Gene3D - 273 392 IPR015300 -
Pral5484g00015 431 PANTHER B3 DOMAIN-CONTAINING 3 379 - -
Pral5484g00015 431 SMART B3_2 6 98 IPR003340 GO:0003677
Pral5484g00015 431 SMART B3_2 296 391 IPR003340 GO:0003677
Pral5484g00015 431 Gene3D - 1 98 IPR015300 -
Pral5484g00015 431 Pfam B3 DNA binding domain 8 96 IPR003340 GO:0003677
Pral5484g00015 431 Pfam B3 DNA binding domain 299 388 IPR003340 GO:0003677
Pral5484g00015 431 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Pral5484g00015 431 CDD B3_DNA 4 96 IPR003340 GO:0003677
Pral5484g00015 431 MobiDBLite consensus disorder prediction 219 257 - -
Pral5484g00015 431 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Pral5484g00015 431 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Pral5484g00015 431 SUPERFAMILY DNA-binding pseudobarrel domain 289 389 IPR015300 -
Pral5484g00015 431 CDD B3_DNA 294 388 IPR003340 GO:0003677
Pral5484g00015 431 MobiDBLite consensus disorder prediction 240 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5484g00015 Pral-Chr5484 99986 103894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5484g00015 1 396 B3 DNA Binding Superfamily AT3G18990 49.749 4.38e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral5484g00015 B3 4.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5484g00015 - - gmx:100813285 624.78