Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5484g00014 ATGAGAGAAGGAACAAATCGCCGGCGATGGAGCTTGCCGGCCGGCAAACCGGCGCATTTTTTCAAGATAATACTTCCCACTACGATTCTTGACAAAAGATTGAGAGTTCCTAAGACGTTTGTGAATCACCATGGGGAAGATTTCTCCCCAGTTATTACCTTACGTGATCCTAATGCTCGAGAATGGAAAATTGGTTTGGAGAAGAGTGAAGAAGATGGTGATGTTTGGTTCTCAGAAGGTTGGGACAAGTTTTTGGAATACTACTCCATCACCAATGAACACTTTCTGGTTTTCAGATACGAAGGAGATTCAAGATTTCATGTTCTAATATTTGACATGAGTGGATCAGAAATTCAATACCCTTCCCAAATTCCAAGTCCTGAGAGAAACCAGGTTGCCTCCTCAGAATCATCAAAGAGCAACGACCATGATCATCACTGGAGTCAAAATCATAATGATAATGATAATAATGATAATTGTAATGGTAATGGTGGTGGTGGTGGTGGTGATTATGATGGTGGTATTGGCCATCACTTTACTGAAGAATATTTTCCTGATGACGAGGATGATTCTACTCATGCATATGAAGAACATAATCTCTACTATAGCACTTCTTCATCCGAATCCACTTCTCCTTCTCCATCTAAATCCAATTCTCCAACAAAAAGACGAGGCTTCACTAAATTCGTAGACCAAGCATCCAAAAGAGAAAGAAGAAAACGCTATTCTTCTCCTTCTTCAAGATCTGCATTTCAAAGAAAAAGGAGGAGGCGTGAACGTAGTGCCAGTGAAAATGATGAACAAAGTGATGGAGGCTCAAATCGTAGAAGGAGGAGGAGGAGATCGGAAGAAGGAAGACGCAGAGGAAGAGAAAAGAAAGAGGACCACGTAGAAAGGGTTCTCAAACAAACAGTGAAATCAAAATCATACAAGAAGAGGCACATATCAGATAGATTAAGAGCCAAAGTTCTTCAAGCAGCTGACAAGTACAGGTCTGACTTTCCTTCTTTCAGGGCTGTCTTGAGACCTCACAACTTATACAACAGTTTTGTGTATGTACCGGCACGTTTTGCAGTGAAGTATCTAGGAGGAGGGTCAGAGAAGATAAAACTGGAGAACGTGAAGGGGAAGCAGTGGGAAGCTCGATGCTTTAACAGGAATGGGTCAGGGAATGGAATGAACATAGGAGAAGGGTGGGCTAAGTTTAAGATGGACAATGAGGTCAAGGAAGGAGATGTGTGTGTGTTTGAGCTGATCAAGAGGAAGGACATTGTGTTAAGAGTTCGGATATTTCGTGTCAGACAATATGCAGATCGGTGA 1320 0.4189 MREGTNRRRWSLPAGKPAHFFKIILPTTILDKRLRVPKTFVNHHGEDFSPVITLRDPNAREWKIGLEKSEEDGDVWFSEGWDKFLEYYSITNEHFLVFRYEGDSRFHVLIFDMSGSEIQYPSQIPSPERNQVASSESSKSNDHDHHWSQNHNDNDNNDNCNGNGGGGGGDYDGGIGHHFTEEYFPDDEDDSTHAYEEHNLYYSTSSSESTSPSPSKSNSPTKRRGFTKFVDQASKRERRKRYSSPSSRSAFQRKRRRRERSASENDEQSDGGSNRRRRRRRSEEGRRRGREKKEDHVERVLKQTVKSKSYKKRHISDRLRAKVLQAADKYRSDFPSFRAVLRPHNLYNSFVYVPARFAVKYLGGGSEKIKLENVKGKQWEARCFNRNGSGNGMNIGEGWAKFKMDNEVKEGDVCVFELIKRKDIVLRVRIFRVRQYADR 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5484g00014 439 MobiDBLite consensus disorder prediction 197 225 - -
Pral5484g00014 439 MobiDBLite consensus disorder prediction 138 152 - -
Pral5484g00014 439 Gene3D - 315 437 IPR015300 -
Pral5484g00014 439 SUPERFAMILY DNA-binding pseudobarrel domain 17 114 IPR015300 -
Pral5484g00014 439 CDD B3_DNA 19 112 IPR003340 GO:0003677
Pral5484g00014 439 Gene3D - 14 115 IPR015300 -
Pral5484g00014 439 MobiDBLite consensus disorder prediction 257 278 - -
Pral5484g00014 439 ProSiteProfiles B3 DNA-binding domain profile. 19 114 IPR003340 GO:0003677
Pral5484g00014 439 SMART B3_2 20 114 IPR003340 GO:0003677
Pral5484g00014 439 SMART B3_2 337 434 IPR003340 GO:0003677
Pral5484g00014 439 SUPERFAMILY DNA-binding pseudobarrel domain 331 432 IPR015300 -
Pral5484g00014 439 MobiDBLite consensus disorder prediction 228 244 - -
Pral5484g00014 439 ProSiteProfiles B3 DNA-binding domain profile. 336 434 IPR003340 GO:0003677
Pral5484g00014 439 CDD B3_DNA 335 432 IPR003340 GO:0003677
Pral5484g00014 439 MobiDBLite consensus disorder prediction 120 297 - -
Pral5484g00014 439 MobiDBLite consensus disorder prediction 120 137 - -
Pral5484g00014 439 PANTHER B3 DOMAIN-CONTAINING 15 422 - -
Pral5484g00014 439 Pfam B3 DNA binding domain 341 433 IPR003340 GO:0003677
Pral5484g00014 439 Pfam B3 DNA binding domain 20 112 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5484g00014 Pral-Chr5484 96512 99345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5484g00014 17 433 B3 DNA Binding Superfamily AT3G18990 30.549 3.10e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral5484g00014 B3 6.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5484g00014 - - pcin:129292744 591.267