Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5483g00009 ATGACTCCTGGAGAATCAAAAACCCTATTTCTTACCTCTCACAGAAACTCCATGATCATTCTCATGATGATGATGATTCCACCGGCGTCTTCTTCTTCTTCTTCAGCTCCTTCTCAGCCACCCCATCTTGGCGTTCACCGCTGGGCCCCATCTGCTTCTCCGGCACCGGCCCCTTCACCGTCCACCCCTGCCCCCGCTCTCCTTGCGGTACCTGTCGGCAAACCATCACCTCTGCCCTCTAAGTTGTCGGTTGACTTCAGCCCACCGCTAATTGCAATGGTGGTCGTCGTTGCCGCCGCCTTCATCGTCGTCACCTATTCCCGCCTCATCTCCCGCCACCTCGTGCCTCCGATAACCCGCCTTGCTCGCCGGTGGCGCCGCCGTAGGCGACGTTCCTACCCACCCTCCTCCTCCGGCGACCTCGACTCACTTCCTTATGATTCTCCTTTTGAGCCGATTGATGGGCCTCACATGTTCTCCCCTTATGGTCTCGACGAGTCCATCATCAAGACCATACCGTTTTCCCTCTACACCGCCAAATCCAAGGATCAATTCGAAGAGTCTCGACGCGATTGCGCAGTTTGTTTGTTGGAGTTCGAAGACGATGAGTACGTCCGAACGCTGCCTTTTTGTTCTCACACTTTTCACCTGGATTGCATCGACGTTTGGCTCAGGTCGCACGCCAATTGCCCCCTGTGCCGCGCCGGAGTTTTGTGCGCAGAGTCCCCGTTCACGCCAATGATGGCAGCGAGGATTCGACCGAGCCTCGACGACGACACGATTTTGCATAGAATCAGTATGGACCCTATGGTCGAAGCTCCATCGCCAGTGGCTCATTCTCTGGTGTCAGAGATCACTCCTTGCAACGAAGAGCAATCACCGAGAAGGAACCACGCGAATCCGGAGGACGATCGATTCAACGGCGGTCGTGATTTCCTCCTGAAGCGATCCTACTCGTTCGGATTCGAACGGAGCTTGGCGTCAGAGAGAATGGTGATGGAGCCGGCGACGGCGTCGCCGTGGCGGTACCACCGAAGGGGAAGCAGCAGCAGCTTCTGGAGCAAAAGGCCGTCACCGTTCGGATCGTTGGGAAAGTCCAGAGTGTTCTCCTTCAGATACTACAGAGGGATGAAGTCGCCGTTCTTCCGGAGGCGAGGGTTCTTTCCTCTGTCGGAATCAAGCATAAGATCATACAACGGAGGAGGAGGAAGCTCGTCACGGCGAAGCAAGTCAATCGCAAGCCCGATGTTCCTGAGATCGTCAGCAGCCTTGGCGGCGGCGGGAGCAGCAGCTTTCTCGTCGAGCCGGCTGAGGTGCGGCGACCCGGAGGCATTGCTGTCACCGGAGAGATACAACAGGAGATAA 1365 0.5663 MTPGESKTLFLTSHRNSMIILMMMMIPPASSSSSSAPSQPPHLGVHRWAPSASPAPAPSPSTPAPALLAVPVGKPSPLPSKLSVDFSPPLIAMVVVVAAAFIVVTYSRLISRHLVPPITRLARRWRRRRRRSYPPSSSGDLDSLPYDSPFEPIDGPHMFSPYGLDESIIKTIPFSLYTAKSKDQFEESRRDCAVCLLEFEDDEYVRTLPFCSHTFHLDCIDVWLRSHANCPLCRAGVLCAESPFTPMMAARIRPSLDDDTILHRISMDPMVEAPSPVAHSLVSEITPCNEEQSPRRNHANPEDDRFNGGRDFLLKRSYSFGFERSLASERMVMEPATASPWRYHRRGSSSSFWSKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSIRSYNGGGGSSSRRSKSIASPMFLRSSAALAAAGAAAFSSSRLRCGDPEALLSPERYNRR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5483g00009 454 MobiDBLite consensus disorder prediction 31 62 - -
Pral5483g00009 454 SMART ring_2 192 233 IPR001841 -
Pral5483g00009 454 MobiDBLite consensus disorder prediction 288 308 - -
Pral5483g00009 454 CDD RING-H2_EL5-like 191 234 - -
Pral5483g00009 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 238 IPR013083 -
Pral5483g00009 454 ProSiteProfiles Zinc finger RING-type profile. 192 234 IPR001841 -
Pral5483g00009 454 PANTHER RING-H2 FINGER PROTEIN ATL16 75 265 IPR044600 GO:0016567|GO:0016740
Pral5483g00009 454 Pfam Ring finger domain 191 234 IPR001841 -
Pral5483g00009 454 FunFam RING-H2 finger protein ATL65 157 238 - -
Pral5483g00009 454 SUPERFAMILY RING/U-box 179 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5483g00009 Pral-Chr5483 39615 41388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5483g00009 84 454 C3H Transcription Factor Family AT3G18930 53.598 7.35e-98 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5483g00009 - K19041 gmx:100795347 521.931