LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5482g00014	ATGGACGAGTATTTGAGCAGCGATGACGATTATCATTACTCCGATCAGGGCTCCGTCGAAGGTTTCGAAAACGACGAGCCCGATATTCAGTTGGTTACTCCCAAGGGCCCCACAACTCTGGTGATTACAAGGGAATCACTTCTAGCTGCGCAGAAAGAAGATTTGCGCCTGGTAATGGAAATGCTATCATTAAGAGAGCACCATGCACGTACTCTGCTTATTTATCATCGTTGGGATGTGGAGAGGTTGTTTGCAGTGTATGTAGACAAGGGAAAAACTGCCTTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACAGTGTGATCCTGACTCATCAGTTCCTTCTTCAGTCACATGCGAAATCTGCATAGAGGATGTTCCCAGTCATGAAGCGACAAGAATGGACTGTGGGCACTGTTTTTGCAACAGCTGTTGGACATCACACTTTATTGTCAAGATAAATGAGGGTCAAAGTAGACGTATAAGGTGCATGGCACACAAATGTAATGCTATTTGTGATGAAGCTGTTGTGAGAAATCTAGTCAGTAAAGAGAACCCTGATATGGCAGAGAAATTTGATCGCTTTCTTCTTGAATCCTACATTGAAGACAATAAAAGAGTCAAATGGTGTCCCAGCATCCCTCATTGTGGGAATGCAATACGTGTTGAAGATGACGAATTATGTGAGGTAGAATGTTCATGTGGTCTACAGTTCTGTTTTAGTTGCTTGTCAGAGACGCATTCCCCATGTTCTTGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCAGAAACAGTTAATTGGATAGCAGTTCATACGAAACCTTGTCCAAAATGCCACAAGCCGGTGGAGAAGAATGGCGGTTGCAACCTGGTTAGCTGCATCTGTGGTCAAGCATTTTGTTGGCTCTGTGGTGGAGCTACTGGGCGAGAACATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAACAGCTAGAGAAAACAGCTGAACGGGCGAAGCGAGATCTATATCGATACATGCATTATCATAATCGCTATAAAGCTCACACAGATTCCTTTAAACTTGAAAGTAAATTGAAAGAGACTATACAGGACAAGGTTGCTATTTCAGAGGAGAGGGATTCTACACTCAGGGACTTTAGTTGGGTGAATAATGGACTTTCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATCCATTTGCATTTTATATGTTTGGAGATGAGCTATTTAAGGATGAAATGTCAGAAGAGGAACGGGAAATAAAACAGCACTTATTTGAGGATCAGCAGCAACAGCTTGAGGCTAATGTTGAGAAGCTTTCCAAAATTCTGGAGGAACCATTTGACCAGTTTACAGATGATAAAGTTATGGAGATAAGGATTCAAGTCATTACCCTGTCAACCATTATTGACAATCTCTGCCAGAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTTCAGTTGGGCACTCACAGTATTGCTCCGTACAAGTCCAAGGGCATAGAGAGGGCATCAGAACTTTCAACTTGTTGGAACTATAAAGCCAATAATGCTGCATAG	1596	0.4248	MDEYLSSDDDYHYSDQGSVEGFENDEPDIQLVTPKGPTTLVITRESLLAAQKEDLRLVMEMLSLREHHARTLLIYHRWDVERLFAVYVDKGKTALFAEAGVSVDEQCDPDSSVPSSVTCEICIEDVPSHEATRMDCGHCFCNSCWTSHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKENPDMAEKFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQLEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQDKVAISEERDSTLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMSEEEREIKQHLFEDQQQQLEANVEKLSKILEEPFDQFTDDKVMEIRIQVITLSTIIDNLCQKMYECIENDLLGSLQLGTHSIAPYKSKGIERASELSTCWNYKANNAA	531

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5482g00014	531	ProSiteProfiles	Zinc finger RING-type profile.	119	167	IPR001841	-
	Pral5482g00014	531	CDD	BRcat_RBR_ANKIB1	197	261	-	-
	Pral5482g00014	531	ProSiteProfiles	TRIAD supradomain profile.	115	329	IPR044066	-
	Pral5482g00014	531	MobiDBLite	consensus disorder prediction	1	29	-	-
	Pral5482g00014	531	CDD	Rcat_RBR_ARI1-like	274	326	-	-
	Pral5482g00014	531	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	113	204	IPR013083	-
	Pral5482g00014	531	Gene3D	-	248	495	-	-
	Pral5482g00014	531	FunFam	RBR-type E3 ubiquitin transferase	114	204	-	-
	Pral5482g00014	531	CDD	RING-HC_RBR_TRIAD1	117	170	-	-
	Pral5482g00014	531	SMART	ibrneu5	190	252	IPR002867	GO:0008270
	Pral5482g00014	531	SMART	ibrneu5	260	325	IPR002867	GO:0008270
	Pral5482g00014	531	SUPERFAMILY	RING/U-box	190	258	-	-
	Pral5482g00014	531	SUPERFAMILY	RING/U-box	116	202	-	-
	Pral5482g00014	531	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	54	393	IPR031127	GO:0004842\|GO:0016567
	Pral5482g00014	531	SUPERFAMILY	RING/U-box	260	317	-	-
	Pral5482g00014	531	Pfam	IBR domain, a half RING-finger domain	190	252	IPR002867	GO:0008270
	Pral5482g00014	531	FunFam	RBR-type E3 ubiquitin transferase	248	495	-	-
	Pral5482g00014	531	Pfam	Ariadne domain	331	529	IPR045840	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5482g00014	Pral-Chr5482	116724	120031	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5482g00014	59	526	ARIADNE family	AT2G16090	76.059	0.0	753

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5482g00014	K11968		-	qsa:O6P43_011634	934.095