Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5482g00003 ATGTCTTTCTCCAATCGATCGAAGCTCACCGGAACTCCGATGGCGTCCACCTCCACTCATCCGCCGCCTAACTTCTTCTACAACGACCACGAACACTCCGTCATCGTTGAGGCACTCACCAATGTCGTCGTCGGTTCCACCGGCACTATCACGGCCACCACCTCCGGCGATGTCATCCAAGAAATTCGATTTCCTCCTACCTTTGAGTACTCCGGTGCAGTATCCGCCACCGCCTCCTCCCCAATCGGAATTGTTCCGACCATGAGCGTTGTCGAGACTTGCGGAGAATGCAAAATCGAAGGGTGCTTAGGTTGCAAATTTTTTCCCGAGGAGAAAAAGAAAAGTGGAGCGAAAAAGAAGGCGGCGACGTCGTCGTCGAAGAAGAAGAAGTACAGAGGAGTGCGACAGAGGCCCTGGGGAAAATGGGCAGCCGAGATCCGAGACCCGAGAAGGGCGACCCGGGTTTGGTTGGGGACGTTCAATACCGCAGAGGAAGCCGCACGCGCATACGATAATGCGGCCATTGAATTTCGCGGGCCGCGAGCGAAGCTCAATTTCCCGTTTCCCGATAACTCACTGAGTGATTCGCATTCCCAAACAGAGCAGCATTTGGAAGCAGAACGCTCAGAGTCCGTGTTGCGGCAAGCAGAGGAAGGAAATAGAAACTCAAATACTGGGAATTATTATGACGATGTTTGGACTATGGGAATTGGGAGTAGCAAGGAAAATGAATTCTTGGATGGACTTGGAGACCCTGAATTTCAACACTGGTTGAAAATGATGATGGATTTTGGAGGAGATTCCTCGGACTCTGCTACCATGAATAGCCAGAGTCCTCATAGTTGGTGA 849 0.5159 MSFSNRSKLTGTPMASTSTHPPPNFFYNDHEHSVIVEALTNVVVGSTGTITATTSGDVIQEIRFPPTFEYSGAVSATASSPIGIVPTMSVVETCGECKIEGCLGCKFFPEEKKKSGAKKKAATSSSKKKKYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTAEEAARAYDNAAIEFRGPRAKLNFPFPDNSLSDSHSQTEQHLEAERSESVLRQAEEGNRNSNTGNYYDDVWTMGIGSSKENEFLDGLGDPEFQHWLKMMMDFGGDSSDSATMNSQSPHSW 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5482g00003 282 Gene3D AP2/ERF domain 129 188 IPR036955 GO:0003700|GO:0006355
Pral5482g00003 282 PANTHER DNA-BINDING DOMAIN 112 217 IPR044808 GO:0003700|GO:0009873
Pral5482g00003 282 SUPERFAMILY DNA-binding domain 130 188 IPR016177 GO:0003677
Pral5482g00003 282 SMART rav1_2 130 193 IPR001471 GO:0003700|GO:0006355
Pral5482g00003 282 MobiDBLite consensus disorder prediction 200 215 - -
Pral5482g00003 282 ProSiteProfiles AP2/ERF domain profile. 130 187 IPR001471 GO:0003700|GO:0006355
Pral5482g00003 282 FunFam Ethylene-responsive transcription factor 2 129 188 - -
Pral5482g00003 282 MobiDBLite consensus disorder prediction 1 23 - -
Pral5482g00003 282 Pfam AP2 domain 130 179 IPR001471 GO:0003700|GO:0006355
Pral5482g00003 282 CDD AP2 129 187 IPR001471 GO:0003700|GO:0006355
Pral5482g00003 282 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Pral5482g00003 282 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Pral5482g00003 282 MobiDBLite consensus disorder prediction 188 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5482g00003 Pral-Chr5482 48220 49275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5482g00003 4 196 AP2-EREBP Transcription Factor Family AT4G34410 40.909 2.32e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5482g00003 AP2 5.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5482g00003 - - pcin:129293970 438.728