Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5480g00006 ATGATGGAGACCCCAAATAGATCTACATCAACAGGGTCTTCGGACTCATCGGAACAGATGGACAAATATGTAACTGATTCAAATTCAAATGCTAACCTGCCTCCATGTCCTTTAAGCCAGCAACCTTCTTGTTCCTTGGATGGCCCTGTTGCTATACTTTGGGATATTGAAAATTGTCCAGTTCCGAGTGGTGTGCGCCCTGAAGATGTTGCCGGGAATGTAACAATGACTTTGCGAGTGCATCCAATAATTAAAGGAGCTGTTGTGATGTTTTCTGCTTATGGGGATTTTAATAATTTCCCCAGGCGACTCAGAGAGGGTTGCCAAAGAACTGGTGTTAAACTCACTGATGTTCCCAGTGGGAGAAAAAATGCTGCTGACAAAGCTATCTTGATCGACATGTTCTTGTTTGCCCTTGACAACCGACCACCATCTTCTATAATGCTGATATCTGGAGATGTTGATTTTGCTCCTGCACTTCATGTTCTTGGCCACCGGGGATATACTATCATTCTTGTCATCCCTGCTGGGGTGGGTGTGCCAACTGCCCTTAGCCGTGCAGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGTTTTGTGCCTCCCTCAAAGGCTCTAGTGCCACCTCATGTCGTTCCAACTGAGGTTGTTCCAGATCTGATTGGGTGCCGTATCAGTGGCAACTTTGATGGGAAAAATGAAGAAGAAGCTATTGTTTATGGAGGGATCTCCCAGAACTACCATAACTCCAAATGTTGTTCATTTGTCTCAGACAAAAGTGATACATTGAATGCATCATGCTTTCCAACGGCTTTGAGGTCACATAGCCTTCCATCCACTCTGAACAATGTTTCAGGAGGTTCTATGTCTTCTTCTAGCAACCGAAATGAATGCCCATTGTGGGTAGAACCTGGGGATTTGAATGGTGTGAAGTGTCAGCTGGTAAAGTTGCTTGAACTCTCTGGAGGTTGTTTGCTTCTGGCTCAAGTTGCACCAGAGTATCAGAAATATTTTGGGAGGTCTCTCTCTGTGTCTAAATATGGGGTACGCAAGTTAGTGAATCTTTTCAAGAAAATGGGTGATCCATTTTCTGTGGAAGGGAAAGGGCCTCGGATGTTTGTACGTCTTCAAAACTGGACTGTGTGCCCTCTGTCTCAGGTGAGCAATGACAAGAAAGGAAAAGGGATTCAAGAAGAGAATGCAGATGTTATCCATGCTGGTTGCTCAGTAGATGAAGAAAGAATAGTCACAGAAGAACATGTTGAGAGAAGCAGCATAGAAAAGGTTCACCAGGGGAAAGCAGCCAGAAGCGAAATTCATGACCGAATTCTGGAACAATTCAAGCATGAGCTGCAAGAGATTCTCGTGATTTATTCTTGTCCAATATTCATAGATTGTTTTGATGACATTTACCAGCTACGATACAAGAAGCCACTGGAATACCAGAGACTGGGCGTGGACAAATTGGATGAATTGTTTGAGAAAGTAAGTGATGCTGTAGTATTGCATGAAGAACCAGTAAGCAAGAGGAAGTTCCTGGCTGCCGTGGATGGTTAA 1569 0.4423 MMETPNRSTSTGSSDSSEQMDKYVTDSNSNANLPPCPLSQQPSCSLDGPVAILWDIENCPVPSGVRPEDVAGNVTMTLRVHPIIKGAVVMFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNAADKAILIDMFLFALDNRPPSSIMLISGDVDFAPALHVLGHRGYTIILVIPAGVGVPTALSRAGKFVWDWPSIARGEGFVPPSKALVPPHVVPTEVVPDLIGCRISGNFDGKNEEEAIVYGGISQNYHNSKCCSFVSDKSDTLNASCFPTALRSHSLPSTLNNVSGGSMSSSSNRNECPLWVEPGDLNGVKCQLVKLLELSGGCLLLAQVAPEYQKYFGRSLSVSKYGVRKLVNLFKKMGDPFSVEGKGPRMFVRLQNWTVCPLSQVSNDKKGKGIQEENADVIHAGCSVDEERIVTEEHVERSSIEKVHQGKAARSEIHDRILEQFKHELQEILVIYSCPIFIDCFDDIYQLRYKKPLEYQRLGVDKLDELFEKVSDAVVLHEEPVSKRKFLAAVDG 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5480g00006 522 PANTHER LIMKAIN B LKAP 20 397 IPR024768 GO:0005777|GO:0010468
Pral5480g00006 522 CDD LOTUS 311 380 - -
Pral5480g00006 522 CDD LOTUS 448 510 - -
Pral5480g00006 522 MobiDBLite consensus disorder prediction 1 36 - -
Pral5480g00006 522 Pfam NYN domain 49 187 IPR021139 GO:0004540
Pral5480g00006 522 Gene3D - 48 194 - -
Pral5480g00006 522 ProSiteProfiles OST-type HTH domain profile. 447 521 IPR025605 -
Pral5480g00006 522 Pfam OST-HTH/LOTUS domain 312 374 IPR025605 -
Pral5480g00006 522 Pfam OST-HTH/LOTUS domain 448 510 IPR025605 -
Pral5480g00006 522 CDD PIN_limkain_b1_N_like 49 175 - -
Pral5480g00006 522 Gene3D - 311 378 IPR041966 -
Pral5480g00006 522 Gene3D - 442 514 IPR041966 -
Pral5480g00006 522 ProSiteProfiles OST-type HTH domain profile. 310 382 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5480g00006 Pral-Chr5480 53664 56771 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5480g00006 46 200 C2H2 Transcription Factor Family AT5G61190 41.935 1.08e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5480g00006 - - gmx:100818186 692.189