Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5480g00002 ATGCTTCGTGGGATTGCCTTTTCCTTGTTTGGGCTTTTGGCCATCTTGGGAGTACAGCTTCCTGCAACAAGGGCTGATTGCCCATTGGATTTAAGTACTTCAAACTTTACAATGGCATCCTCCGTCTGCTCAGACCAAGGTGACAGAAATGGCTGTTGTCGCTACATTAATGCTAATATTGCCGTTTCTGTTGCTCGATATGCAAATGGAACAGGCAACCTTGGAGTCCCTCCAGATGCTTCTGACTTCTGCCTCCAGACCATAACTGAGACTTTGCAACTTTATGGAGTTTCACCAAATGCAGCTGTTTTCTGTGGCTTTGGGACAAAAGTCCCGGTTAATTACGAGTGTAAAGGTCGAACTACTGTCACACAGATGCTGCAATCTCCAAGATTTGGAGAGGTCACTAAAAATTGCAAAGTGCCTCTTGTAAAGGAAAGTGATTGCAAGCAATGTTTGAATGCTGCCATTGGTTACCTACATAATGTAATAGGTGTACAGGATAATATCACATTAAGTACATGCCGTGATGCCACTTTTACTGCGTTGGCAAGCCAAGTTGATGATATGTCTACTGTTGAAACTGCGAGCTGTTTCTTTGGGGTTCAAGGACTTCTCGGGCCTACTGTTTCAGAGCCATCCACTTCACCAACTCCTGAGGCTTCTCCAAGTCCTCCAGCTGCTGATAGCCCAAGTCCATTGCTGATAGGTGTACCACTTAAAAGAAATCACCATAGATACCACTTGACATTAATCCCAGGTATCGGTATTGCCGTCACAGCTGCTGCGGTTATGATGCTTGTAGTTTTGGTCGTTTTAATTCGTCAAAAAGGCAGAGAGCTAGAGGGACCTGATCATTTAAGTAAAACCTCCTCGAAATCCTTACCCCCTTCTGCCACATGGAGATTTCAGGATGGTCCTTCGTCTACGTTTCGAAAATTCAACTATAGCGAGATTAAGAGGGCCACAGATAATTTTGGCACTGTGATTGGGCAAGGAGGATTTGGAACTGTGTATAAAGCTGATTTTAGTGATGGTTTAGTGACAGCAGTAAAGCGTATGGATAAATCAGCAGAGCAAAAGGGGGATGAGTTTTGTAGAGAAATAGAGCTTGTTGCCCGGCTTCATCACCGCCATCTAGTTGCATTAAGAGGATTTTGCATTAAAAAACATGAGAGGTTTCTGATATACGAGTACATGGAAAATGGAAGCTTGAAAGACCATCTTCATTCCCCTGGGAAAACGCCCCTGAGTTGGCGAAATAGAATCCAAATTGCCATTGACGTGGCTAATGCACTGGACTACCTTCATTTCTATTGCGATCCTCCTCTCTGCCACAGAGACATTAAATCTAGCAACATTTTACTGGATGAGAAATTTGTTGCAAAGCTAGCTGATTTCGGACTGGCACACGCTTCAAAATATGGTTCTATATGCTTTGAACCAGTAAATACTGATATCCGGGGAACTCCAGGTTATATGGATCCAGAATATGTTGTTACTCAAGAACTCACCGAGAAAAGTGATATTTACAGTTTTGGTGTGCTATTATTAGAGATTGTAACTGGAAGACGAGTAATTCAAGATAATAAGAATTTGGTAGAATGGGCACAACCATTCATGGAATCCGAATCAAGATTGATGGAGTTAGTGGATCCCAATGTGAGGGAATCTTTTGATTTGGATCAGCTCCAAACAGTTGTCTCTATAGTAGGATGGTGCACCCAGAGAGAAGGCAGGGCAAGGCCTTCAATAAAACAAGTCCTTAGACTTCTGTATGAGACTTCAGAACCCATGCACAGTGGATTTTTACAAGCTGTTGAAGATGAAGAATATGCAGCAAATCAGCAATCTGGCAGAAGAAGCAAGGGAAAGTTACACAGAAGTGAATCAAATTATCACAGTGGGGATGGAAGATATTTAGCTTCTTCTTCAAGTACATCCAGGTCCTATTGCAGTAGAAGTTTCTTACTTGAGACAGGATCCCCGCAGTCCCCTCAGAATATTTTTTCAGTTTAA 2019 0.426 MLRGIAFSLFGLLAILGVQLPATRADCPLDLSTSNFTMASSVCSDQGDRNGCCRYINANIAVSVARYANGTGNLGVPPDASDFCLQTITETLQLYGVSPNAAVFCGFGTKVPVNYECKGRTTVTQMLQSPRFGEVTKNCKVPLVKESDCKQCLNAAIGYLHNVIGVQDNITLSTCRDATFTALASQVDDMSTVETASCFFGVQGLLGPTVSEPSTSPTPEASPSPPAADSPSPLLIGVPLKRNHHRYHLTLIPGIGIAVTAAAVMMLVVLVVLIRQKGRELEGPDHLSKTSSKSLPPSATWRFQDGPSSTFRKFNYSEIKRATDNFGTVIGQGGFGTVYKADFSDGLVTAVKRMDKSAEQKGDEFCREIELVARLHHRHLVALRGFCIKKHERFLIYEYMENGSLKDHLHSPGKTPLSWRNRIQIAIDVANALDYLHFYCDPPLCHRDIKSSNILLDEKFVAKLADFGLAHASKYGSICFEPVNTDIRGTPGYMDPEYVVTQELTEKSDIYSFGVLLLEIVTGRRVIQDNKNLVEWAQPFMESESRLMELVDPNVRESFDLDQLQTVVSIVGWCTQREGRARPSIKQVLRLLYETSEPMHSGFLQAVEDEEYAANQQSGRRSKGKLHRSESNYHSGDGRYLASSSSTSRSYCSRSFLLETGSPQSPQNIFSV 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5480g00002 672 SUPERFAMILY Protein kinase-like (PK-like) 305 595 IPR011009 -
Pral5480g00002 672 CDD STKc_IRAK 330 592 - -
Pral5480g00002 672 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Pral5480g00002 672 Pfam SPARK 23 163 IPR043891 -
Pral5480g00002 672 Pfam Protein kinase domain 328 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5480g00002 672 ProSiteProfiles Protein kinase domain profile. 324 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5480g00002 672 SMART serkin_6 324 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5480g00002 672 MobiDBLite consensus disorder prediction 615 645 - -
Pral5480g00002 672 FunFam Putative receptor-like protein kinase 400 600 - -
Pral5480g00002 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 444 456 IPR008271 GO:0004672|GO:0006468
Pral5480g00002 672 Gene3D Phosphorylase Kinase; domain 1 302 399 - -
Pral5480g00002 672 MobiDBLite consensus disorder prediction 210 235 - -
Pral5480g00002 672 PANTHER OS01G0750732 PROTEIN 154 617 - -
Pral5480g00002 672 Gene3D Transferase(Phosphotransferase) domain 1 400 618 - -
Pral5480g00002 672 MobiDBLite consensus disorder prediction 218 232 - -
Pral5480g00002 672 FunFam Putative receptor-like protein kinase 292 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5480g00002 Pral-Chr5480 48937 53498 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5480g00002 23 671 Receptor kinase-like Gene Family AT3G19300 60.429 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_URK-1 Pral5480g00002 Pkinase 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5480g00002 - - gmx:100809641 1017.68