Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5480g00001 ATGTCTGTGAATTTAGAGCCGTTGGATTCAGGAGTGCAGATCCCTTACCACTTCAGGTGCCCCATTTCCCTCGAGCTGATGCGGGAACCCGTTACTATATCCACGGGTCAGACCTATGACCGAACCAGCATAGAGTCGTGGTTCGCCGCCGGCAATACCACCTGCCCCGTCACCAGAGCGCCGCTTTCTGATTTCACTCTCATCCCAAACCACACTCTTCGCCGCCTTATCCAAGACTGGTGCGTCTCAAATCGCGAGTTCGGAGTCGAACGGATCCCAAGTCCGACCCAGCCCGCCCACCCTTCAGTGGTACGGACCTTGTTGAATCAGGCATCGTCGGAGAGGAGCACTTCTCAGTCACGTATCTCTGCGCTGCGACGGCTTAGAAGATTTGCTGCTGACTCGGACAAGAATTGTTCGCTCATTGGATCTTACAACGTGCGCCGGATTTTACTCCATCTCCTTTTTGATCCCAATTCGGATTGTTTTGAGTTGAAGCACGAGTCGCTCGCGCTTTTGGTTTGTTTTTCACTTGCCGAATCTGAATGCGTCTTCGTCGCATCGGAGCCGGAGAGAATCAAGTATTTGTCGCGTTTGATGTTTCATTCCTCCATCGACGTCCGAGTTAACTCGGCTGCACTGATTGAGACCGTCGTGAGCGGGACTCGTTCGCAGGAGCTGCGTGCACAAATCAGCAATGTCGATGAAATCTACGAAGGAGTGGTTGACATCCTGAAGAGTCCGGTTTCGTCCCCTCGGTCTCTCAAGGTTGGGATCAAGGCCTTGTTCGCTTTGTGCCTGGTGAAACAAACACGACACAAAGCGGTTGCCGCCGGAGCTCCGGAGATCCTCATCGACCGGCTCGCTGATTTCGAGAAATGCGACGCCGAGAGAGCTCTGGTGACGATTGAGTTACTCTGTCGAATTCCTGAGGGGTTGGCTGCGTTTGCAGGGCACCCGCTGACGGTACCGCAGCTGGTGAAACCAATACTGAAGATATCCGACCGGGCGACAGAGCACACCGCCGGAGCACTATGGGCCCTTTGCTCAGAATCGGAGGAGTGCCGGAGGAAGGCGGTGGCGGCGCGTGTGCTAACGCCCCTGCTATTGGTGGTACAGAGTGATTGTACAGAGAGGGCAAAGAGGAAGGCGCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAAGATTGCGGCGGAAACTCCGACGATTTTGCATGGAGCGAACTCGTAGTACCGTTCTGA 1248 0.5473 MSVNLEPLDSGVQIPYHFRCPISLELMREPVTISTGQTYDRTSIESWFAAGNTTCPVTRAPLSDFTLIPNHTLRRLIQDWCVSNREFGVERIPSPTQPAHPSVVRTLLNQASSERSTSQSRISALRRLRRFAADSDKNCSLIGSYNVRRILLHLLFDPNSDCFELKHESLALLVCFSLAESECVFVASEPERIKYLSRLMFHSSIDVRVNSAALIETVVSGTRSQELRAQISNVDEIYEGVVDILKSPVSSPRSLKVGIKALFALCLVKQTRHKAVAAGAPEILIDRLADFEKCDAERALVTIELLCRIPEGLAAFAGHPLTVPQLVKPILKISDRATEHTAGALWALCSESEECRRKAVAARVLTPLLLVVQSDCTERAKRKAQMLLKLLRDSWPQDCGGNSDDFAWSELVVPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5480g00001 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Pral5480g00001 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Pral5480g00001 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Pral5480g00001 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Pral5480g00001 415 FunFam U-box domain-containing protein 31 13 87 - -
Pral5480g00001 415 SUPERFAMILY RING/U-box 12 88 - -
Pral5480g00001 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Pral5480g00001 415 PANTHER WDSAM1 PROTEIN 11 399 IPR045185 GO:0061630
Pral5480g00001 415 SUPERFAMILY ARM repeat 103 391 IPR016024 -
Pral5480g00001 415 Gene3D - 93 401 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5480g00001 Pral-Chr5480 6226 7807 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5480g00001 1 415 U-box Gene Family AT1G49780 65.166 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5480g00001 - - pcin:129284989 617.846