Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5479g00004 ATGGAGGAAGCTCAGGAGCCTCAAACTCAACCTCTGGGTGAAGGAGATCAAAATGAAATAATTACTGAAAGTTCTGCATTTGTTAAAGGGGAACCTCCACAAGAAGTGAGTAATCCGCCTAAAGTTGACTCAGAGGTTGAAATCCTCCACGAGAATGTTACAAAACAAATAATTAAGGAAGGTCATGGTCAGAAGCCTACCAAATATTCAACATGCTTTTTTCATTACAGGGCATGGACTGAAAGCACACAGCACAAGTTTGAAGACACATGGGATGAGCAACGACCCACTGAAATGATATTAGGGAAAGAGAAGAAAGAGATGACTGGCTTGGCTATTGGTGTGGCCAGCATGAAAGCTGGTGAGCGTGCCTTACTGCGTGTGGGCTGGGAATTAGGATATGGAAAGGAAGGCAACTTCTCTTTTCCAAATGTTCCACCTATGGCAGATTTAATTTATGAAGTTGAGCTCATAGGCTTTGATGAAACAAAAGAAGGGAAACCTCGCAGTGATATGACTGTTGAGGAGAGGATTGGTGTGGCAGATCGTAGAAAGATGGATGGAAATGCTTTGTTTAAAGAGGAGAAATTGGAGGAGGCTATGCAACAGTATGAAATGGCCATAGCATATATGGGAGATGACTTCATGTTCCAGTTGTTTGGGAAGTATAGGGATATGGCTTTGGCTGTAAAGAATCCTTGCCACCTTAACATGGCTGCATGTTTGATTAAGCTGAACCGTTATGACGAAGCCATAGGACAATGTAGCCTTGTGTTGAGTGAGGATGAAAACAATGTGAAAGCATTATTTAGACGAGGTAAGGCTAGGGCAGCACTAGGCCAAACAGATGCTGCCAGGGAGGATTTTCTGAAAGCAAAGAAATATGCCCCAGAGGATAAAGCAATAGCAAAAGAATTGCGATTGCTTGCGGAACAAGACAAGGCTCTTTATCAAAAGCAAAAAGAGATATATAAAGGAATGTTTGGACCAAGGCCTGAAACAAGACCCAGGCAAAAGAATCTTCTGATTCTTATTTGGCAGTTGTTGCTGGCAGTATTTCATCGCCTCATTATGTTCTTCAAGCGTGAAAGGCAAAAATCTGACTAA 1107 0.4219 MEEAQEPQTQPLGEGDQNEIITESSAFVKGEPPQEVSNPPKVDSEVEILHENVTKQIIKEGHGQKPTKYSTCFFHYRAWTESTQHKFEDTWDEQRPTEMILGKEKKEMTGLAIGVASMKAGERALLRVGWELGYGKEGNFSFPNVPPMADLIYEVELIGFDETKEGKPRSDMTVEERIGVADRRKMDGNALFKEEKLEEAMQQYEMAIAYMGDDFMFQLFGKYRDMALAVKNPCHLNMAACLIKLNRYDEAIGQCSLVLSEDENNVKALFRRGKARAALGQTDAAREDFLKAKKYAPEDKAIAKELRLLAEQDKALYQKQKEIYKGMFGPRPETRPRQKNLLILIWQLLLAVFHRLIMFFKRERQKSD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5479g00004 368 Gene3D Tetratricopeptide repeat domain 163 294 IPR011990 GO:0005515
Pral5479g00004 368 MobiDBLite consensus disorder prediction 1 42 - -
Pral5479g00004 368 Pfam Tetratricopeptide repeat 267 299 IPR019734 GO:0005515
Pral5479g00004 368 Gene3D - 37 162 IPR046357 GO:0003755
Pral5479g00004 368 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 69 161 IPR001179 GO:0003755
Pral5479g00004 368 SUPERFAMILY TPR-like 173 327 IPR011990 GO:0005515
Pral5479g00004 368 MobiDBLite consensus disorder prediction 10 24 - -
Pral5479g00004 368 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 96 336 IPR039663 -
Pral5479g00004 368 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 65 158 IPR001179 GO:0003755
Pral5479g00004 368 FunFam Peptidylprolyl isomerase 166 294 - -
Pral5479g00004 368 ProSiteProfiles TPR repeat profile. 266 299 IPR019734 GO:0005515
Pral5479g00004 368 SMART tpr_5 181 214 IPR019734 GO:0005515
Pral5479g00004 368 SMART tpr_5 266 299 IPR019734 GO:0005515
Pral5479g00004 368 SMART tpr_5 232 265 IPR019734 GO:0005515
Pral5479g00004 368 SUPERFAMILY FKBP-like 33 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5479g00004 Pral-Chr5479 54710 59067 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5479g00004 104 328 Calmodulin-binding Proteins AT3G25230 35.398 1.48e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5479g00004 - - gmx:100790587 635.565