Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5478g00007 ATGCCGGGAAAATCTGATGTGGAAGATAAGAGGTATGAAGGTGGAGGGCAGATTCAGTTTCAATCAGGCATTTTCTCTCAGCCATGGTGGCGTGGTGTGGAGGAAAATGCCTCTAAGTCATCTTCAGTATACCAGATTAGTGGTTCAGTCATGAATTCACCAGTTAATGAAGGAGCAAATAAAGTTGATTTTCATAAGCAGACACAGCCTATGGTTTCACCTTCACTTTCTGCAGTTGGTGGGAATGTCAACAAAGATGACCAAAACAACAAATATGTTATGTCCTCTTCACCAAATGCCATGGGCAAACACCTTAGTTCAAATTCCCAAGCCGAACTTGTCAGTCATTCGATTATTTTAACCTCTTACCCTTACTCAGAAGCACAGTATGCTGGAATCTTGGCATCTCATGGGCCTCACAATATGATAAATCCTCAGTTGTATGGAATGCACCAGGCTAGAATGCCCTTGCCACTAGAGATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATCTTAAGGCGAAGGCAGTCACGTGCTAAGGCTGAGCTTGAAAGGAAAGTTATTAAAGTTAGAAAGCCATATCTTCACGAATCTCGTCACCAACATGCTATGAGAAGGGCAAGAGGGTGTGGGGGTCGCTTTCTGAATACGAAGAAGCTTGAAAATATCAATTCCAATGTTGCTCCCGAAAAAGACAAGAACAATGGTTCAAACCCTTTGTCAATATCTGCCAACACACCCTCCTCTGACCATTCTCTAATCAACAATGAGATTTTCGGCTCATCGAAGAATCATCATGACATGTCGGTGTCCATGGTGGGGAACATGCACAGTGGAGACTTATTTGGTCGAGAGAGGGGAAGCATGCAGATTCACGGAGCCTCAAATATGGCCATCAAATGA 918 0.4346 MPGKSDVEDKRYEGGGQIQFQSGIFSQPWWRGVEENASKSSSVYQISGSVMNSPVNEGANKVDFHKQTQPMVSPSLSAVGGNVNKDDQNNKYVMSSSPNAMGKHLSSNSQAELVSHSIILTSYPYSEAQYAGILASHGPHNMINPQLYGMHQARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELERKVIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLENINSNVAPEKDKNNGSNPLSISANTPSSDHSLINNEIFGSSKNHHDMSVSMVGNMHSGDLFGRERGSMQIHGASNMAIK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5478g00007 305 SMART cbf3 161 222 IPR001289 GO:0003700|GO:0006355
Pral5478g00007 305 ProSitePatterns NF-YA/HAP2 subunit signature. 167 187 IPR018362 GO:0003677|GO:0016602
Pral5478g00007 305 Gene3D - 162 223 - -
Pral5478g00007 305 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 164 219 IPR001289 GO:0003700|GO:0006355
Pral5478g00007 305 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 50 278 IPR001289 GO:0003700|GO:0006355
Pral5478g00007 305 ProSiteProfiles NF-YA/HAP2 family profile. 162 222 IPR001289 GO:0003700|GO:0006355
Pral5478g00007 305 PRINTS CCAAT-binding transcription factor subunit B signature 196 219 IPR001289 GO:0003700|GO:0006355
Pral5478g00007 305 PRINTS CCAAT-binding transcription factor subunit B signature 165 187 IPR001289 GO:0003700|GO:0006355
Pral5478g00007 305 MobiDBLite consensus disorder prediction 229 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5478g00007 Pral-Chr5478 37438 41412 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5478g00007 84 241 CCAAT-HAP2 Transcription Factor Family AT3G20910 46.512 7.78e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral5478g00007 CBFB_NFYA 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5478g00007 K08064 - gmx:100782085 288.5