Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5478g00006 ATGCCGGGAAAATCTGATGTGGAAGATAAGAGGTATGAAGGTGGAGGGCAGATTCAGTTTCAATCAGGCATTTTCTCTCAGCCATGGTGGCGTGGTGTGGAGGAAAATGCCTCTAAGTCATCTTCAGTATACCAGATTAGTGGTTCAGTCATGAATTCACCAGTTAATGAAGGAGCAAATAAAGTTGATTTTCATAAGCAGACACAGCCTATGGTTTCACCTTCACTTTCTGCAGTTGGTGGGAATGTCAACAAAGATGACCAAAACAACAAATATGTTATGTCCTCTTCACCAAATGCCATGGGCAAACACCTTAGTTCAAATTCCCAAGCCGAACTTGTCAGTCATTCGATTTACATGCAGATTTTAACCTCTTACCCTTACTCAGAAGCACAGTATGCTGGAATCTTGGCATCTCATGGGCCTCACAATATGATAAATCCTCAGTTGTATGGAATGCACCAGGCTAGAATGCCCTTGCCACTAGAGATGGAAGAGGAGCCTGTTTATGTCAATGCAAAGCAGTATCATGGTATCTTAAGGCGAAGGCAGTCACGTGCTAAGGCTGAGCTTGAAAGGAAAGTTATTAAAGTTAGAAAGCCATATCTTCACGAATCTCGTCACCAACATGCTATGAGAAGGGCAAGAGGGTGTGGGGGTCGCTTTCTGAATACGAAGAAGCTTGAAAATATCAATTCCAATGTTGCTCCCGAAAAAGACAAGAACAATGGTTCAAACCCTTTGTCAATATCTGCCAACACACCCTCCTCTGACCATTCTCTAATCAACAATGAGATTTTCGGCTCATCGAAGAATCATCATGACATGTCGGTGTCCATGGTGGGGAACATGCACAGTGGAGACTTATTTGGTCGAGAGAGGGGAAGCATGCAGATTCACGGAGCCTCAAATATGGCCATCAAATGA 927 0.4347 MPGKSDVEDKRYEGGGQIQFQSGIFSQPWWRGVEENASKSSSVYQISGSVMNSPVNEGANKVDFHKQTQPMVSPSLSAVGGNVNKDDQNNKYVMSSSPNAMGKHLSSNSQAELVSHSIYMQILTSYPYSEAQYAGILASHGPHNMINPQLYGMHQARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELERKVIKVRKPYLHESRHQHAMRRARGCGGRFLNTKKLENINSNVAPEKDKNNGSNPLSISANTPSSDHSLINNEIFGSSKNHHDMSVSMVGNMHSGDLFGRERGSMQIHGASNMAIK 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5478g00006 308 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 50 281 IPR001289 GO:0003700|GO:0006355
Pral5478g00006 308 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 167 222 IPR001289 GO:0003700|GO:0006355
Pral5478g00006 308 Gene3D - 165 226 - -
Pral5478g00006 308 ProSiteProfiles NF-YA/HAP2 family profile. 165 225 IPR001289 GO:0003700|GO:0006355
Pral5478g00006 308 MobiDBLite consensus disorder prediction 232 268 - -
Pral5478g00006 308 SMART cbf3 164 225 IPR001289 GO:0003700|GO:0006355
Pral5478g00006 308 ProSitePatterns NF-YA/HAP2 subunit signature. 170 190 IPR018362 GO:0003677|GO:0016602
Pral5478g00006 308 PRINTS CCAAT-binding transcription factor subunit B signature 168 190 IPR001289 GO:0003700|GO:0006355
Pral5478g00006 308 PRINTS CCAAT-binding transcription factor subunit B signature 199 222 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5478g00006 Pral-Chr5478 37434 41412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5478g00006 84 244 CCAAT-HAP2 Transcription Factor Family AT3G20910 45.977 2.73e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Pral5478g00006 CBFB_NFYA 1.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5478g00006 K08064 - gmx:100782085 283.108