Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5477g00003 ATGTGCAGTGGTCCAGATAAATCAAAAGCCTCCTCAACTTCTTCTTCATCTACTGTAGAAGGTGCAACTAACATCAAAGACATGAAAAATCTAACTGTTCATACGGAAGATTCTTTTTCCAGCTTGCTGGAATTTGCTGCTAACAATGATGTTGACGGTTTCAAGCTACTGCTAGATAGGGATATTTCTTCAATAAATGAAGCTGGGCGTTGGTATTGTCGCCTAATGGGGTCAAAACAAATTATTCTTGATGATAGAACTCCATTAATGGTTGCTGCAACCTATGGCAGTATTGATGTTCTTAAGCTTATACTCTCTTATCCAGAGGCCAATGTTAATTTCACATGTGGGATAAGCAAGAGTACTGCCCTTCACTGTGCTGCGTCAGGTGGATCTGATAATGCGGTTGATGTTGTGAAGCTTCTTATTGAAGCTGGTGCTGATCTTAGTTGCAAGGATGCTAGTGGGAATCGTCCTGTTGATGTTATTGTTCTTCATCCGAAGCTGCAAGTCATGAGAGCAATACTGGAGGAGCTTCTTTCTGATAGTGCCTCTCATGACTCCACAGGTGACTGCTCTATTCCAATACCTGTTAATTCATCTAGTCCTGGTTTACCTGCCCATTTATTTTCCCCCGAGAATGGAGTACCATCCTCTCCTTCAAGCTCACCTTCTTCTCCAGTGGCCTTAAAGTTGACTGACACCCCTGTTAGCTCTACCTTAGAGAAGAAAGAGTATCCAATTGATCCATCGCTTCCTGACATAAAAAACAGCATTTATGCAACGGATGAGTTTCGCATGTTCTCATTCAAGGTTCGCCCTTGCTCCCGTGCATACTCTCATGATTGGACCGAGTGCCCTTTTGTTCATCCAGGAGAGAATGCTCGTAGGAGAGACCCCAGGAAATTCCATTACAGTTGTGTGCCATGCCCTGATTTTCAGAAGGGGGCTTGTAGGCGGGGGGATATGTGTGAATATGCACATGGAGTATTTGAATGCTGGCTACACCCTGCTCAGTATCGCACTCGACTCTGCAAAGATGGCACAAATTGTAACAGAAGGGTGTGTTTTTTTGCTCACACAGCCGAAGAGTTGCGTCCACTTTATGTGTCCACTGGATCTGCTGTTCCTTCTCCACGAGCATCTGCCTCTGCTCCCAATGTCATGGATATGGCTGCTGCAATGAACCTGTTACCTGGTTCTCTTTCATCAGTGTCTTCTATGTCTCCTTCTCACTTTAACCAGCCGATGTCTCCGTCTGGTAATGGCATCTCACACTCATCTCCAGCCTGGCCACAGCCCAATGTGCCAGCCCTTCATCTTCCAGGAAGTAATCTTCAATCCAGTCGCTTGAGATCTTCTCTTAGTGCTCGTGACATTCCACCACAAGACTTGAATATGATGCCGGAATTTGATGGCCAGCAACATCTCTTGAATGATCTGGGCTGTTTCTCACAGCCCCGTCCTGGTGCTGTTGCTTTGAACCGATCTGGTCGGTCCAAGACACTAACTCCATCTAATCTTGAAGAGCTATTTTCTAATGAAATTTCTTCATCTCCTCGGTACTCTGATCCAGCAGCGGGATCTGTTTTTTCTCCCACACACAAATCTGCTGTTCTCAATCAGTTTCAACAGCTTCAAAGTATGCTGTCACCCATAAATACAAATGTTTTGTCTCCTAAGGGTGCTGAGCATCCTCTAATGCAGGCTCCATTTGGTGTGCCTTCCCCTGGGAGGATGTCACCCAGAAGTGTGGATCCAATCTCTCCTATGAGCTCTCGGTTATCTCCATTTGCTCAGCGTGAGAAACAGCAGCAGCAACAGCTGCGAAGTCTTAGTTCAAGGGATCTTGGTTCCAAAATTCCTGCTTCAGTTGTTGGTTCTCCTGGGAACTCGTGGTCTAATTGGGGATCTCCTACTGGGAAAGTTGATTGGTCAATGAATGGAGATGAGTTGGGTCGATTGCGGAAATTTTCTTCATTTGAGCACGGGAACAATGGGGAAGAGCCTGATCTATCTTGGGTTCAGTCCCTTGTTAAAGAATCCCCACCTGAGATGATGAAAGAGAAGCTGGCAGCTTCTGGTCCCATGGCATCTGCGGAAAAACTGAATTCAATGTCTCAAGTCGAGTCCATGGATAATTCTGTGGTAGGAGCTTGGCTTGAGCAAATGCAGCTGGATCAGCTTGCTGTCTAG 2196 0.4577 MCSGPDKSKASSTSSSSTVEGATNIKDMKNLTVHTEDSFSSLLEFAANNDVDGFKLLLDRDISSINEAGRWYCRLMGSKQIILDDRTPLMVAATYGSIDVLKLILSYPEANVNFTCGISKSTALHCAASGGSDNAVDVVKLLIEAGADLSCKDASGNRPVDVIVLHPKLQVMRAILEELLSDSASHDSTGDCSIPIPVNSSSPGLPAHLFSPENGVPSSPSSSPSSPVALKLTDTPVSSTLEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFQKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCNRRVCFFAHTAEELRPLYVSTGSAVPSPRASASAPNVMDMAAAMNLLPGSLSSVSSMSPSHFNQPMSPSGNGISHSSPAWPQPNVPALHLPGSNLQSSRLRSSLSARDIPPQDLNMMPEFDGQQHLLNDLGCFSQPRPGAVALNRSGRSKTLTPSNLEELFSNEISSSPRYSDPAAGSVFSPTHKSAVLNQFQQLQSMLSPINTNVLSPKGAEHPLMQAPFGVPSPGRMSPRSVDPISPMSSRLSPFAQREKQQQQQLRSLSSRDLGSKIPASVVGSPGNSWSNWGSPTGKVDWSMNGDELGRLRKFSSFEHGNNGEEPDLSWVQSLVKESPPEMMKEKLAASGPMASAEKLNSMSQVESMDNSVVGAWLEQMQLDQLAV 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5477g00003 731 Gene3D - 304 367 - -
Pral5477g00003 731 MobiDBLite consensus disorder prediction 1 20 - -
Pral5477g00003 731 MobiDBLite consensus disorder prediction 408 432 - -
Pral5477g00003 731 MobiDBLite consensus disorder prediction 214 230 - -
Pral5477g00003 731 MobiDBLite consensus disorder prediction 586 618 - -
Pral5477g00003 731 ProSiteProfiles Ankyrin repeat profile. 119 154 IPR002110 GO:0005515
Pral5477g00003 731 PANTHER UNKEMPT FAMILY MEMBER 44 682 IPR045234 -
Pral5477g00003 731 ProSiteProfiles Ankyrin repeat region circular profile. 119 153 - -
Pral5477g00003 731 Pfam CCCH-type zinc finger 309 329 IPR041367 -
Pral5477g00003 731 MobiDBLite consensus disorder prediction 562 637 - -
Pral5477g00003 731 SMART c3hfinal6 304 330 IPR000571 GO:0046872
Pral5477g00003 731 SMART c3hfinal6 339 362 IPR000571 GO:0046872
Pral5477g00003 731 SMART ANK_2a 84 114 IPR002110 GO:0005515
Pral5477g00003 731 SMART ANK_2a 119 151 IPR002110 GO:0005515
Pral5477g00003 731 SMART ANK_2a 37 67 IPR002110 GO:0005515
Pral5477g00003 731 ProSiteProfiles Zinc finger C3H1-type profile. 309 331 IPR000571 GO:0046872
Pral5477g00003 731 MobiDBLite consensus disorder prediction 207 230 - -
Pral5477g00003 731 SUPERFAMILY Ankyrin repeat 31 178 IPR036770 -
Pral5477g00003 731 Gene3D - 13 198 IPR036770 -
Pral5477g00003 731 MobiDBLite consensus disorder prediction 408 455 - -
Pral5477g00003 731 PRINTS Ankyrin repeat signature 85 100 IPR002110 GO:0005515
Pral5477g00003 731 PRINTS Ankyrin repeat signature 138 152 IPR002110 GO:0005515
Pral5477g00003 731 MobiDBLite consensus disorder prediction 440 455 - -
Pral5477g00003 731 Pfam Ankyrin repeats (3 copies) 45 153 IPR002110 GO:0005515
Pral5477g00003 731 FunFam Zinc finger CCCH domain-containing protein 66 262 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5477g00003 Pral-Chr5477 23569 27923 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5477g00003 1 728 C2H2 Transcription Factor Family AT5G12850 52.965 0.0 697
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5477g00003 Ank_2 8.3e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5477g00003 - - gmx:100792574 1085.09