Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5475g00010 ATGCCTAAGAGGCATTGCAAGTTCTTTGCTCGCGGAGCATGTACCAAAGGGGACCAGTGTGAATACTCTCATGACAGAAAGAATCCTTCAATCAATATTTGTAGGTTCTATCAGAAAGGCACATGTGCTTTTGGTGGTCAATGCAAATATAAACATATCCAAACTTCTCAGGCACAATCTTTGGAACATGGAAGCCAGCTCCTGAATTTTGATAGACATGGAAAGAGTATAAAACTTGAGCATCAAGATTACCAAAAGAATTATGATGCCAGCGAACCCAGTACTGCTTTACCATCAAGAAAAAAGTGTTCTTGTGTTCCTGGAGAACTATGTGTTTACTGTAAAAAGTTCTGTCTGTATCATTCTGAACCAAATGAAAAAGAGGAGCATTTGCAAATCTGTGGGAAAAAGGAAAAGTACCTTGAGGTTTTGAATAAAAGTCAAGAAATAGAGTGCAGGATTTGCTATGAACGTGTTCTTTCAAAGCCTAAAGCAGATGAATGTAAGTTTGGTATTCCTTCTGCGTGCAATCATCCTTTCTGTTTATCATGTATCAGGAATTGGCGTAGTAGTTCTCCAACCTCATTTATAAAGTTACCGGCCAATAGAAATGTGAAGACCTGCCCCATATGCCGGAAGTTATCATATTACGTGATTCCAAGTACTGTCTGGTATTTTACAATGGAAGAGAAACAGGAAATTATTGGCAACTACAAGACAAGCTGCAAGTTGATTAATTGCAAGCATTTTGACTTGGGAAACGGATATTGTCCCTTTAGGAATAATTGTTTCTACAGGCATACAGTGAAGCCTGGTTCATATACATGGATACATCACAAACCACCACCAGCTCCACCCAGATCATATCTGGATTTGCCAAGTCAAGAATTTCCTCCAAATTTAGAGCTTTTCAATGAGATGTATCCTTCAGAGATAAGGGGTTTACCAGGGACACTGGTTAATTCAATGCAGTTTGATGCTGACACCTCAAATGATGAAACTGACCCTTCCTTTGGCTTGGCTGCTATGTCTGAAGTTTTAGATTCTAATTCAGACGCCATTGATTCTGAAGACTTGAATCTATTTGAGATTATGCCATTAACTCATCAGGGTCCGGATGGTTCATGGTGGTTTGGTATTGAAGGTTTTGATGATCAAGCAATGGGTGTTGTGCCTTCTGTAGCGGGGCAGGGTGGTTCATCTTTGTCTGTTCCTGATATGCCCCCATCAGAGACACTTGGTAGTTCGTCGGGTCATGAAGATCCTAAAGTATCAAATAATGAAGAGCAGAATCCTGCTGAGCCATCATGA 1311 0.402 MPKRHCKFFARGACTKGDQCEYSHDRKNPSINICRFYQKGTCAFGGQCKYKHIQTSQAQSLEHGSQLLNFDRHGKSIKLEHQDYQKNYDASEPSTALPSRKKCSCVPGELCVYCKKFCLYHSEPNEKEEHLQICGKKEKYLEVLNKSQEIECRICYERVLSKPKADECKFGIPSACNHPFCLSCIRNWRSSSPTSFIKLPANRNVKTCPICRKLSYYVIPSTVWYFTMEEKQEIIGNYKTSCKLINCKHFDLGNGYCPFRNNCFYRHTVKPGSYTWIHHKPPPAPPRSYLDLPSQEFPPNLELFNEMYPSEIRGLPGTLVNSMQFDADTSNDETDPSFGLAAMSEVLDSNSDAIDSEDLNLFEIMPLTHQGPDGSWWFGIEGFDDQAMGVVPSVAGQGGSSLSVPDMPPSETLGSSSGHEDPKVSNNEEQNPAEPS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5475g00010 436 SMART c3hfinal6 28 54 IPR000571 GO:0046872
Pral5475g00010 436 SMART c3hfinal6 241 269 IPR000571 GO:0046872
Pral5475g00010 436 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Pral5475g00010 436 SUPERFAMILY CCCH zinc finger 31 52 IPR036855 GO:0046872
Pral5475g00010 436 CDD RING-HC_MKRN 150 212 - -
Pral5475g00010 436 ProSiteProfiles Zinc finger C3H1-type profile. 241 270 IPR000571 GO:0046872
Pral5475g00010 436 Gene3D - 2 66 - -
Pral5475g00010 436 SUPERFAMILY CCCH zinc finger 3 25 IPR036855 GO:0046872
Pral5475g00010 436 SMART ring_2 152 211 IPR001841 -
Pral5475g00010 436 SUPERFAMILY RING/U-box 146 218 - -
Pral5475g00010 436 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 33 53 IPR000571 GO:0046872
Pral5475g00010 436 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
Pral5475g00010 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 229 IPR013083 -
Pral5475g00010 436 ProSiteProfiles Zinc finger C3H1-type profile. 28 55 IPR000571 GO:0046872
Pral5475g00010 436 PANTHER MAKORIN-RELATED 4 314 IPR045072 GO:0000209|GO:0061630
Pral5475g00010 436 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Pral5475g00010 436 MobiDBLite consensus disorder prediction 390 436 - -
Pral5475g00010 436 MobiDBLite consensus disorder prediction 396 421 - -
Pral5475g00010 436 Pfam Zinc finger, C3HC4 type (RING finger) 152 211 IPR018957 GO:0046872
Pral5475g00010 436 ProSiteProfiles Zinc finger RING-type profile. 152 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5475g00010 Pral-Chr5475 56185 59655 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5475g00010 zf-C3HC4 7.2e-06 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5475g00010 K15687 - gmx:100788886 355.525