Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5471g00006 ATGGCGAAGATGTCACAGAGGAAGGTGAAGAACGCTGAAAACAGCAGTACGCCTTCAAATACCAAGACGAAACGGACTCGCAAAAGCATTCCCAGAGACTCTCCTCCGCAACGAAGCTCCGTTTATCGAGGTGTTACCAGGCATCGTTGGACGGGCCGGTATGAGGCTCATCTCTGGGATAAGAATTGCTGGAATGAATCGCAGAGCAAGAAAGGAAGACAAGTGTATTTAGGGGCATATGATGATGAAGAAGCTGCAGCACGTGCCTATGACTTGGCAGCATTGAAGTACTGGGGCCAAGACACCATCCTCAATTTTCCTCTCACAAATTATGAAGAAGAGGTCAAGGAAATGGAGGGCCAATCAAAAGAAGAATACATTGGATCCTTAAGAAGAAAAAGCAGCGGGTTCTCGCGCGGAGTCTCGAAGTACAGAGGCGTAGCAAGACACCATCACAATGGAAGATGGGAGGCTCGGATTGGCAGAGTCTTCGGCAACAAATATCTTTATCTCGGAACTTTCGCTACACAAGAAGAAGCAGCCGCAGCATATGATATGGCAGCCATAGAATACAGAGGACTTAATGCCGTTACAAACTTTGACCTCAGCCGTTATATCAATTGGCTCCGTCCTAAAACCCAAGACTCCAATGAAAACCCTACTACTGATAACACCACCGAGTCTGGACCAAGCTCTAATCCTGAACTTGAATTGGGTTTCTCTGACGACACAATGGTGGCGCCACCACGATCCGGAGGCGGGGCTCCGCCGTCATCTGCACTAGGGCTCCTCTGGCAATCCTCAAAGTTCAAGGAAATGCTGGAGAGGACTTCATCAGCCGGAGACCATAGTTACCCTGCAACGGCAGTAACTTCAGAATCAAAGCCTCCTGGTCGTATATTTCCTGAAGATATTCAAACATTCTTTGATTGTCATGATTCAAGCAGCTACCCTGAAACTGATGACATCATCTTTGGTGATTTGAGCTCAATTGCTGCTCCAATTTTCCATTGCGAGCTGGATGCTTAG 1029 0.4762 MAKMSQRKVKNAENSSTPSNTKTKRTRKSIPRDSPPQRSSVYRGVTRHRWTGRYEAHLWDKNCWNESQSKKGRQVYLGAYDDEEAAARAYDLAALKYWGQDTILNFPLTNYEEEVKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTFATQEEAAAAYDMAAIEYRGLNAVTNFDLSRYINWLRPKTQDSNENPTTDNTTESGPSSNPELELGFSDDTMVAPPRSGGGAPPSSALGLLWQSSKFKEMLERTSSAGDHSYPATAVTSESKPPGRIFPEDIQTFFDCHDSSSYPETDDIIFGDLSSIAAPIFHCELDA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5471g00006 342 FunFam AP2-like ethylene-responsive transcription factor 142 203 - -
Pral5471g00006 342 SMART rav1_2 143 207 IPR001471 GO:0003700|GO:0006355
Pral5471g00006 342 SMART rav1_2 41 113 IPR001471 GO:0003700|GO:0006355
Pral5471g00006 342 MobiDBLite consensus disorder prediction 211 238 - -
Pral5471g00006 342 ProSiteProfiles AP2/ERF domain profile. 41 107 IPR001471 GO:0003700|GO:0006355
Pral5471g00006 342 MobiDBLite consensus disorder prediction 211 258 - -
Pral5471g00006 342 MobiDBLite consensus disorder prediction 1 44 - -
Pral5471g00006 342 MobiDBLite consensus disorder prediction 276 299 - -
Pral5471g00006 342 FunFam AP2-like ethylene-responsive transcription factor 40 109 - -
Pral5471g00006 342 Pfam AP2 domain 142 193 IPR001471 GO:0003700|GO:0006355
Pral5471g00006 342 Pfam AP2 domain 40 99 IPR001471 GO:0003700|GO:0006355
Pral5471g00006 342 CDD AP2 142 203 IPR001471 GO:0003700|GO:0006355
Pral5471g00006 342 ProSiteProfiles AP2/ERF domain profile. 143 201 IPR001471 GO:0003700|GO:0006355
Pral5471g00006 342 Gene3D AP2/ERF domain 41 109 IPR036955 GO:0003700|GO:0006355
Pral5471g00006 342 Gene3D AP2/ERF domain 142 203 IPR036955 GO:0003700|GO:0006355
Pral5471g00006 342 SUPERFAMILY DNA-binding domain 40 108 IPR016177 GO:0003677
Pral5471g00006 342 SUPERFAMILY DNA-binding domain 142 203 IPR016177 GO:0003677
Pral5471g00006 342 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 232 - -
Pral5471g00006 342 MobiDBLite consensus disorder prediction 8 24 - -
Pral5471g00006 342 PRINTS Ethylene responsive element binding protein signature 183 203 IPR001471 GO:0003700|GO:0006355
Pral5471g00006 342 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5471g00006 Pral-Chr5471 49686 52867 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5471g00006 37 236 AP2-EREBP Transcription Factor Family AT5G57390 63.981 9.52e-93 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Pral5471g00006 AP2 2.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5471g00006 K09285 - pop:18097139 484.567