Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5470g00005 ATGGGGTCTGTAGAGAAGGTAGACCTTGATTTTGATGAGGAGGTCCCTTTTAGCTCCTCAACAAACCCGGGGAAAGTCCATGCTTTTCAATCTGAGACAACTAATAATATGCTTTCTTCCGTAAATTTGGCCAGCTCATCCATCTTCAAGCAAGTGGGGATAAAACCCATCAGGAGCATATACATTGTCTTAATTAAAGCGAAGATCAACATGTTGCTACCTTTTGGTCCCTTAGCCATATTGCTACATTATCTAACAGGAAAACATGGATGGGTGTTCTTCTTCGCCTTACTGGGTATTACTCCTCTGGCGGAACGTCTGGGTTATGCTACTGAGCAGCTTGCATTTTTCACAGGACCAACAGTTGGGGGTTTGCTAAATGCCACATTTGGAAATGCAACTGAAATGATTATATCAATTTATGCTTTGAAAAATGGGATGATTAGGGTTGTTCAGCAATCTTTACTGGGTTCAATCTTGTCAAATATGCTTCTTGTTCTGGGATGTGCATTCTTTACCGGTGGGATTGTCCACTACGAAAAGGTTCAGGTTTTTGACAAGGCACCTGCTGTTGTGAATTCGGGATTGCTATTGATGGCTGTAATGGGAATACTGTTCCCTGCCGTCCTTCACTTTACTCACTCAGAGGTTCACTTTGGCAAGTCAGAGCTTGCTCTATCCAGATTTAGTAGCTGTATAATGCTAATAGCATATGCTAGCTACCTTTTCTTTCAACTAAGAAGTCATCACAATAATTATAGTTCACTTGAAGAGGAAGGAGATGGTAATGAAAATCCTGATGAGGAAGAAGAATGTGAATTAACAAAATGGGAGGCGATAGGCTGGCTTGCTATTTTGACAGCATGGGTTTCTATTTTGTCTGGATATCTTGTTGATGCCATAGAGGGGGCATCTGAGTCATGGAATATACCAGTGGCATTTATAAGTGTCATATTGCTTCCAATTGTAGGAAATGCTGCAGAGCACGCAAGTGCTATCATGTTTGCCATGAAGGACAAGCTTGATATTACACTTGGAGTTGCTATTGGATCATCTACTCAGATATCTATGTTTGTGATCCCCTTTTGTGTGGTAGTTGGGTGGTGCATGGGAAAACCAATGGACTTGAATTTCCAACTCTTTGAGACTGCTACACTTTTCATCACCGTGCTTGTTGTCGCATTTATGTCGCAG 1194 0.4154 MGSVEKVDLDFDEEVPFSSSTNPGKVHAFQSETTNNMLSSVNLASSSIFKQVGIKPIRSIYIVLIKAKINMLLPFGPLAILLHYLTGKHGWVFFFALLGITPLAERLGYATEQLAFFTGPTVGGLLNATFGNATEMIISIYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHYEKVQVFDKAPAVVNSGLLLMAVMGILFPAVLHFTHSEVHFGKSELALSRFSSCIMLIAYASYLFFQLRSHHNNYSSLEEEGDGNENPDEEEECELTKWEAIGWLAILTAWVSILSGYLVDAIEGASESWNIPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGKPMDLNFQLFETATLFITVLVVAFMSQ 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5470g00005 398 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 48 398 IPR004713 GO:0006812|GO:0008324|GO:0016020
Pral5470g00005 398 Gene3D - 120 258 IPR044880 -
Pral5470g00005 398 Gene3D - 269 398 IPR044880 -
Pral5470g00005 398 FunFam Vacuolar cation/proton exchanger 267 398 - -
Pral5470g00005 398 Pfam Sodium/calcium exchanger protein 280 396 IPR004837 GO:0016020|GO:0055085
Pral5470g00005 398 Pfam Sodium/calcium exchanger protein 91 246 IPR004837 GO:0016020|GO:0055085
Pral5470g00005 398 NCBIfam calcium/proton exchanger 72 397 IPR004798 GO:0006816|GO:0015369
Pral5470g00005 398 NCBIfam calcium/proton exchanger 63 397 - -
Pral5470g00005 398 FunFam Vacuolar cation/proton exchanger 120 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5470g00005 Pral-Chr5470 36185 40789 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5470g00005 57 398 Antiporters AT3G13320 77.843 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5470g00005 K07300 - qsa:O6P43_017901 622.854