Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5468g00028 ATGGATGGTATTCATGGGAGTGATTCTCGTATGCACATGAGTGATGCACAACATTCGATGCATGTGCCCTATGTGCCAGAAAACGAACAACATGGATTGGACCATATGAGTGATGGAAATAGGATGGAGGACAATAACAACTGTGGTGATGCTAATGTCAGCAGACATGAGAGTGTAGAAGGAGAAGTTTCCAACCCTGGAAATGTCACTGACGATCATGGTGCGATAATTGAACAAGCTAGTGGTGACCAGCTCACATTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCGCCGGAAAAGGTTCAAGCTGTGCTGCTACTATTGGGAGGCCGTGAAGTACCTTCCATGTCTGCAAATCCAATGAATGTTCACCATAATAACCGGGATATGTCTGGGACTCCAATGAAACTCAGTGTCCCTCAAAGATTAGCCTCATTGATTAGATTTCGGGAAAAGCGGAAAGAACGAAATTTTGAAAAGAAAATACGTTATACTGTTCGTAAAGAAGTGGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACGTCTTCCAAGTCGAACCCTGATGAGTCTGCGCCAGCTGCAACAAATCTGGGGACAAATGAAAACTGGACATCAGATAATATTGGATCCCAACAGCAGGATGTTGTCTGTAGGCATTGTGGCATCAGTGAGAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACTCTCTGCAATGCATGTGGACTTATGTGGGCAAATAAGGGAACTCTGAGGGACCTGACAAAAACTCCCTTGCCTGGACACAATTCTTCATTAAATAGGAATGAGAATAAAAGTTTAGGCCAGGCAGGTAGTTCTTAG 864 0.4375 MDGIHGSDSRMHMSDAQHSMHVPYVPENEQHGLDHMSDGNRMEDNNNCGDANVSRHESVEGEVSNPGNVTDDHGAIIEQASGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSANPMNVHHNNRDMSGTPMKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESAPAATNLGTNENWTSDNIGSQQQDVVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPGHNSSLNRNENKSLGQAGSS 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5468g00028 287 CDD ZnF_GATA 220 263 IPR000679 GO:0006355|GO:0043565
Pral5468g00028 287 Gene3D - 212 278 IPR013088 GO:0006355|GO:0008270
Pral5468g00028 287 Pfam tify domain 81 112 IPR010399 -
Pral5468g00028 287 SMART GATA_3 215 268 IPR000679 GO:0006355|GO:0043565
Pral5468g00028 287 Pfam CCT motif 145 187 IPR010402 GO:0005515
Pral5468g00028 287 Pfam GATA zinc finger 221 257 IPR000679 GO:0006355|GO:0043565
Pral5468g00028 287 MobiDBLite consensus disorder prediction 264 287 - -
Pral5468g00028 287 PANTHER GATA TRANSCRIPTION FACTOR 28 18 272 IPR045280 GO:0006355
Pral5468g00028 287 MobiDBLite consensus disorder prediction 261 287 - -
Pral5468g00028 287 ProSiteProfiles GATA-type zinc finger domain profile. 215 263 IPR000679 GO:0006355|GO:0043565
Pral5468g00028 287 ProSitePatterns GATA-type zinc finger domain. 221 248 IPR000679 GO:0006355|GO:0043565
Pral5468g00028 287 MobiDBLite consensus disorder prediction 42 65 - -
Pral5468g00028 287 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 269 - -
Pral5468g00028 287 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Pral5468g00028 287 SMART tify_2 78 113 IPR010399 -
Pral5468g00028 287 MobiDBLite consensus disorder prediction 180 211 - -
Pral5468g00028 287 ProSiteProfiles CCT domain profile. 145 187 IPR010402 GO:0005515
Pral5468g00028 287 MobiDBLite consensus disorder prediction 38 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5468g00028 Pral-Chr5468 271658 275234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5468g00028 1 281 Tify Gene Family AT1G51600 59.862 4.63e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5468g00028 CCT 1.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5468g00028 - - pvu:PHAVU_008G254600g 410.609