Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5465g00011 ATGAGCTTCTTGCAGGGGATTATGGACTCGCTCAGCTCAATCTTGTCTTCCCCCAATTCTTCTAATGATGATTCTCCTTCGAATCCCAACCTTCCCAGCTCTTCGAATATGGAAGGCGGGCCTACCCCCTCAATTTCTAATGAACGAGTCGCTTACAAGCTCAAAGGGTATTTCGATTTGGCCAAGGAAGAGATTGCCAAGGCTGTTAGGGCCGAAGAGTGGGGCTTGATCGATGATGCTATTCTTCATTATAACAGCGCTCAGCGGATTTTGATCGAAGCCAGTTCAACTGCTGTGCCTTCCTATATTACTTCCAGTGAACAACAGAAGGTCAAATCTTATCGTGAAAAAATATCGAAATGGCAGGGTCAAGTTTCTGAAAGGTTACAGATTCTAAGCAGACGAGCAGGCAGCAAGCCCACTATTCAGAAAACTGCAACTGAGGGACAAACTGCTGCAGTTTCATTTAAGCCATCAAATGCTAGAAAAGGCGTGCAGCAAAAGAATCATCAAAGAACAAACCATATGGATAAAGATGTAAGCCCAAAATCTAGTCAGACATCTGGCGGAAATTATGATGCAAAATTAGTTGAAACAATTAACACTGCCATAGTAGACAGAAGTCCTTCTGTTAGATGGGAAGATATTGCGGGTCTTGAGAAGGCGAAGCAAGCACTAATGGAAATGGTTATTTTGCCAACTAAGAGAAGAGATTTATTCACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTTCTCTTTGGTCCCCCAGGTAATGGCAAAACCATGCTTGCCAAAGCAGTAGCTTCAGAATCAGCAGGAACATTTTTTAACGTATCTGCAGCTTCCTTGACGTCAAAATGGGTTGGTGAAGGTGAAAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAACCATCAGTGATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGATTAAAATCTGAATTTCTTATCCAATTTGATGGGGTAACCTCCAATCCTGATGACATTGTAATTGTTATTGGAGCTACCAATAAGCCACAAGAACTGGATGATGCAGTTCTTCGGAGACTGGTGAAGAGAATTTACGTACCTTTGCCAGATGCAAATGTTCGGAGACTTCTACTAAAGCACAAACTCAAGGGTCAAGCGTTCTCATTGCCTAGTGGAGATCTGGAAAGGCTTGTAAAAGATACAGAAGGATATTCCGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATAAGAGAGCTGGGTTCTGACATCCTAACTGTTAAGTCAAATCAGGTAAGAGGACTGAGATATGAGGATTTTAAGAAGGCAATGAAAGTAATTAGACCCAGTTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGGTGGAATGAAGAGTTTGGCTCTAACTGA 1458 0.4266 MSFLQGIMDSLSSILSSPNSSNDDSPSNPNLPSSSNMEGGPTPSISNERVAYKLKGYFDLAKEEIAKAVRAEEWGLIDDAILHYNSAQRILIEASSTAVPSYITSSEQQKVKSYREKISKWQGQVSERLQILSRRAGSKPTIQKTATEGQTAAVSFKPSNARKGVQQKNHQRTNHMDKDVSPKSSQTSGGNYDAKLVETINTAIVDRSPSVRWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDANVRRLLLKHKLKGQAFSLPSGDLERLVKDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKSNQVRGLRYEDFKKAMKVIRPSLNKSKWEELERWNEEFGSN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5465g00011 485 FunFam AAA-type ATPase family protein 47 136 - -
Pral5465g00011 485 Gene3D - 209 479 IPR027417 -
Pral5465g00011 485 Gene3D - 381 463 - -
Pral5465g00011 485 Gene3D - 47 136 - -
Pral5465g00011 485 MobiDBLite consensus disorder prediction 14 43 - -
Pral5465g00011 485 CDD MIT_spastin 54 132 - -
Pral5465g00011 485 FunFam Spastin, putative 209 393 - -
Pral5465g00011 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 482 IPR027417 -
Pral5465g00011 485 CDD RecA-like_spastin 215 378 - -
Pral5465g00011 485 Pfam ATPase family associated with various cellular activities (AAA) 250 380 IPR003959 GO:0005524|GO:0016887
Pral5465g00011 485 SMART AAA_5 246 382 IPR003593 GO:0016887
Pral5465g00011 485 ProSitePatterns AAA-protein family signature. 352 371 IPR003960 GO:0005524|GO:0016887
Pral5465g00011 485 Pfam Vps4 C terminal oligomerisation domain 451 483 IPR015415 -
Pral5465g00011 485 SMART smart 54 131 IPR007330 -
Pral5465g00011 485 PANTHER AAA DOMAIN-CONTAINING 108 484 - -
Pral5465g00011 485 MobiDBLite consensus disorder prediction 14 44 - -
Pral5465g00011 485 FunFam AAA-type ATPase family protein 381 463 - -
Pral5465g00011 485 MobiDBLite consensus disorder prediction 158 191 - -
Pral5465g00011 485 Pfam AAA+ lid domain 405 437 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5465g00011 Pral-Chr5465 98893 105890 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5465g00011 209 435 Calmodulin-binding Proteins AT3G56690 42.373 3.25e-46 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5465g00011 K13254 - gmx:100786789 758.444