Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5457g00003 ATGTCAGCCATCGCTTCTCCGATCACTGCCGATGATGACGACCGTTCAGAAAGTCTGTTCTACGGCCCCGACGCCATTGACATTGCGTCCGATAAATCCGACAAGGATCAGAAAGATTTGAGTTCAGCCATGAGGTCTGTGAGGACAGAAGGGAACTTGATATCAGTTTCACCTGCAGTAGGAAACCTTGAAGTGACACCACCATCTTATTTGCCTCTTATGGAAGGGAATGCAGCTATGGCTAAAGTTTCTGTTCCTTCATATAATGAATTAGAAGCTGATGTTGAAAATGCTGGATCCCTTTCACAGCAGAAAACCTTTGTAGGATTTAGTGAACCAAGTTGCAATTACACTTCATGTTTATGTGATGTCAATGAGGGTATAAGGTCTGGGCCTTCGAGGTCAATGACAGATTTTGGAAAAGATGGGACTATCCACCTGCAGAGAGATTGCTTTGTCGAAAAGGCTAGTGGTGGTCAAAATCATATAGAGCATATTACGAAGTTGAACATGCAATCAGGAGATGCTATGAGCCCAATGACATCAAGGTTTGCCAGGCATCCTTCGCCTGACTTGAGGACCAGAGCTCTGTCTCCCAATGCTGAGATTAAAGTTGGAAACAAGCGTCATGAAATCATATGTGGCTTTTATGCCAAAGGATGGTGCATCAGGGGCAATTCTTGTTGTTTTCTTCATATAAAAGATCCCGAAAATAAATCCGGCCAGCAGATTGAAGGAGAATTGGTTACTCAAAATTGGAAGAGAGAAGTGCAACCAAAGGAAGGTACTGGAGATGATGTTAAGAGGTCAAGGATGCCTTGTACTCAAGTTCCGTTGGCTGCTACACAAGAAAGAATATCTCGGTATTCATCTGAATTCTCCTCAAACCCAATCATCCAGAAAGAAGTAAGCCCAAGCTGGCATCCAGATAAAAGTGGGCCTGTCTCCTCTTTCCCTTCCAGTCTAACACATACGGAGGGAATGACTACCACTCAACGGCTAGATATGCATCATGGATATACATCCCAATTTGTGAGTCATTCACCTAATGTAAACATGGCTACTCACCTTCCAACTACATGTATGTCACTGTCCCATCTTATTCCTTCCCGATCAGGATGTTCATTGTCTTTTAGTGGATCCATAAGTGAAAGTTCTATAGATTCTCAACAACTTCTGAACAGTGGCATGGCTTATCATGACAGCAGATCCCCTTTCTCTGGTTCAGAAAGGGAAGGTTTGGCTCTAAATGGTTCATTTGGGGTTCCACCACACCCAATTGGATGTAAATTAAAATTCTCTTCAGATGATTGGGAGCCGTCCGTACCTTTCAAACCATCTTTTTTTATTACTTCTTCAGGCAGATCATCTGTCGAAGATCAAAAAGACCCTTTTGACAGTATTGTTGAGATACCCAATATAGGGGATGAATCTTTGAAAGCTTTCATTTTATCTCAAAGATCATCCATTCGGTCTTCATCCCAGGTTCCTACAAATGGTGAGTTTGTTGAAGCTGCAAATCAGGGTTCAGATCTTCATGGTGCCAAAATTTCTATAGAATAG 1563 0.4242 MSAIASPITADDDDRSESLFYGPDAIDIASDKSDKDQKDLSSAMRSVRTEGNLISVSPAVGNLEVTPPSYLPLMEGNAAMAKVSVPSYNELEADVENAGSLSQQKTFVGFSEPSCNYTSCLCDVNEGIRSGPSRSMTDFGKDGTIHLQRDCFVEKASGGQNHIEHITKLNMQSGDAMSPMTSRFARHPSPDLRTRALSPNAEIKVGNKRHEIICGFYAKGWCIRGNSCCFLHIKDPENKSGQQIEGELVTQNWKREVQPKEGTGDDVKRSRMPCTQVPLAATQERISRYSSEFSSNPIIQKEVSPSWHPDKSGPVSSFPSSLTHTEGMTTTQRLDMHHGYTSQFVSHSPNVNMATHLPTTCMSLSHLIPSRSGCSLSFSGSISESSIDSQQLLNSGMAYHDSRSPFSGSEREGLALNGSFGVPPHPIGCKLKFSSDDWEPSVPFKPSFFITSSGRSSVEDQKDPFDSIVEIPNIGDESLKAFILSQRSSIRSSSQVPTNGEFVEAANQGSDLHGAKISIE 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5457g00003 520 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 213 232 IPR000571 GO:0046872
Pral5457g00003 520 MobiDBLite consensus disorder prediction 302 324 - -
Pral5457g00003 520 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 173 496 - -
Pral5457g00003 520 SUPERFAMILY CCCH zinc finger 208 232 IPR036855 GO:0046872
Pral5457g00003 520 MobiDBLite consensus disorder prediction 310 324 - -
Pral5457g00003 520 MobiDBLite consensus disorder prediction 175 194 - -
Pral5457g00003 520 ProSiteProfiles Zinc finger C3H1-type profile. 208 235 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5457g00003 Pral-Chr5457 28546 32321 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5457g00003 zf-CCCH 2.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5457g00003 - - pcin:129285431 439.884