Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5456g00006 ATGTCAGCCATCGCTTCTCAGATCACTGCCGATGATACCGACTGTTTAGAAAGTCTGTTCTACGGCCCCGACGCCATTGACATTGCGTCCGATAAGGATCAGAAAGGTTTCTTCGTCGATGAATTTCTAGAAAATAATGTGAGCTGTGCGCAACAAGATTTGATGAAAAATGGGGCAATATCTCCTTCCGAATGCACTATTGAAGAGGATTATTGTAAACAGCCTGTTACTGATTTGCAGAAAGCCAGGCACAATGTTGCTCTTTATACTGACTTCTATTTGAGTTCAGCCATGAGGTCTGTGTGGACAGAAGGGAACTTGATACCAGTTTCACCTGCAGCAGGAAACCTTGAAGTGACATCACCATCTTATTTGCCTCTTATGGAAGGGAATGCAGCTATGGCTAAAGTTTCTGTTCCTTCATATAATGCGCCTACAATTAGAAAGAAAGATTGTAAACTGAAACGCAAACTTTCAAGTAGTCCAGAATCAAGAAAAAATCTGGATCTGGAAGACGATAAAAATCAGCAATTAGAAGATGATGTTGAAAATGCTGGATCCCTTTCACAGCAGAAAACCTTTGGAGGATGTAGTGAACCAAGTTGCAATTACACTTCATATTTATGTGATGTCAATGAGGATATAAGTTCTGGGCCTTCCAGGTCAATGACAGATTTTGGAAAAGAGGGGACTATCCACCTGCCGAGAGATTGCTTCGTTGAGAAGGCTAGTGGTGGTCAAAATCGTATAAAGCAGATTAGGAAGCTGAACATGCAATCAGGAGATGCAATGAGCCCAATGACACCAAGGTTTTCCAGGCATCCTTCTCCTGACTTGAGGACCAGAGATTTATCTCCCTGTGCTGAGACGCAAGTTGGAAACAAGCGTCATGAAATGATATGTGCTTTTTATGCCAAAGGATGGTGCATCAGGGGTAATTCTTGTAGTTTTCTTCATATAAAAGATCCTGAAAATAAATCCGGCCAGCAGATTGAAGGAGAATTGGTTACTCAAAATTGGAAGAGAGAAGTGCAACCAGAGGAAGGTGCTGGAGATGATGTCAAGAGATCAAGGATGCCTTGTACTCAAGTTCCGTTGGCTGCCACACAAGAAAGAACATCTCAGTATTCATCTGAATTTTCCTCAAACCCAATCATCCAGAAAGAAGTAAGCCCAAGTTGGCATCCAAATAAAAGCTGGGCTGTCTCCTCCTTCCCTTCCAGTCTAACCCATACAGAGGGAATGACTACCACTCAACGGCTAGACATGCATCATGGATATACATCCCAATTTGAGAGTCATTCACCTAATGTAAACATGGCTACTCACCTTCCAACTGCATATTCTCAACAACTTCTGAACAGTGGCATGGCTTGTCATGACACCAGATCCCCTTTCTCTGGTTCAGAAAGGGAAGGTTTGGCTCTAAATGGTTCATTTGGGGTTCCACCACACCCAACTGGATGTAGATCGTCTGTTGAGGATCAAAAGGACCCTTTTGACAGTATTGTTGAGGTACCCAATATAGGGGATGAATCCTTGAAAGCTTTCATTTCATCTCAAAGAACACCCATTCTGACTTCATCTCAGGTTCCTACAAATGGTGAGTCTGTTGAAGCTGCAAATCAGGGTTCAGATCTTCATGGTGCCAAAAGTTCTGTATCTCAACCAGAGAAGAGTTGTGTTCCTCATGAAAAAAGTTTTGTTACAACTGAAACAGATACAATGGCAGCAACATATCTAAATTGCCAATTTGGAAGGGTTGGTATGGGGCTAAATCCCTTTGAAGAGGTTAAAAGTATAGGAAAAGAACAAACTGAGCGTGATGCTAGACCTCAAGTTGAGGTAACAGAGGACAAAAAACAAAGAGTAGATAGGGGTAAGAAAAACAGTGAAATGGATAATAATCTTCAGAAGGATGCTGGCGTGCAGATAGAATCAATGGAACTGAGGAATTTCCGTTTCGCACTTGTTGATCATGTGAAAGAGATTTTAAGACCAGTTTGGCTCGAGGGTGACCTCAGCAAGGATGCACATAACATGATTGTTAAAAAATCAGTTGACAAGATTATTAACACTCTACAGCCTCAGCAAATTCCAACAAATGAGGATTCTATCAAGAAGTACCTTTCTTTTTGTCAGTTGAAAATTGTAAATCTCGTCAAGGGATATACCAGTATATATGGGAAGATTCGATAA 2199 0.4143 MSAIASQITADDTDCLESLFYGPDAIDIASDKDQKGFFVDEFLENNVSCAQQDLMKNGAISPSECTIEEDYCKQPVTDLQKARHNVALYTDFYLSSAMRSVWTEGNLIPVSPAAGNLEVTSPSYLPLMEGNAAMAKVSVPSYNAPTIRKKDCKLKRKLSSSPESRKNLDLEDDKNQQLEDDVENAGSLSQQKTFGGCSEPSCNYTSYLCDVNEDISSGPSRSMTDFGKEGTIHLPRDCFVEKASGGQNRIKQIRKLNMQSGDAMSPMTPRFSRHPSPDLRTRDLSPCAETQVGNKRHEMICAFYAKGWCIRGNSCSFLHIKDPENKSGQQIEGELVTQNWKREVQPEEGAGDDVKRSRMPCTQVPLAATQERTSQYSSEFSSNPIIQKEVSPSWHPNKSWAVSSFPSSLTHTEGMTTTQRLDMHHGYTSQFESHSPNVNMATHLPTAYSQQLLNSGMACHDTRSPFSGSEREGLALNGSFGVPPHPTGCRSSVEDQKDPFDSIVEVPNIGDESLKAFISSQRTPILTSSQVPTNGESVEAANQGSDLHGAKSSVSQPEKSCVPHEKSFVTTETDTMAATYLNCQFGRVGMGLNPFEEVKSIGKEQTERDARPQVEVTEDKKQRVDRGKKNSEMDNNLQKDAGVQIESMELRNFRFALVDHVKEILRPVWLEGDLSKDAHNMIVKKSVDKIINTLQPQQIPTNEDSIKKYLSFCQLKIVNLVKGYTSIYGKIR 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5456g00006 732 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 241 445 - -
Pral5456g00006 732 MobiDBLite consensus disorder prediction 261 284 - -
Pral5456g00006 732 MobiDBLite consensus disorder prediction 154 190 - -
Pral5456g00006 732 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 319 IPR000571 GO:0046872
Pral5456g00006 732 ProSiteProfiles Zinc finger C3H1-type profile. 295 322 IPR000571 GO:0046872
Pral5456g00006 732 Gene3D - 287 362 - -
Pral5456g00006 732 MobiDBLite consensus disorder prediction 156 173 - -
Pral5456g00006 732 MobiDBLite consensus disorder prediction 602 640 - -
Pral5456g00006 732 MobiDBLite consensus disorder prediction 527 559 - -
Pral5456g00006 732 SUPERFAMILY CCCH zinc finger 295 319 IPR036855 GO:0046872
Pral5456g00006 732 MobiDBLite consensus disorder prediction 602 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5456g00006 Pral-Chr5456 103716 108010 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5456g00006 zf-CCCH 7.7e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5456g00006 - - pcin:129285431 817.379