Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5456g00001 ATGGAAACAAGCAGAGCTGAGGGAAAGAGGAGCTCAAGGTACAGGAAAAAAGAAGAGGAGGAGGAGGAGGAGGAAGACGAAGAGGAAGAAGTAGAAGAAGACGATGAAGAAGAGACAGAAAGTCAACTTGGCTCTGGAGAAGAACATGGAAGAAAGAGAAGAGTTATGTCAAATACATACAGCAGGAGAGGCCCCAAACCAGGAAGCTCATCGGCGGCGCCACCGTCTTGTCAGGCCGATGACTGCCAGACTGATCTGAGCGACGCCAAACCGTATCACCGGCGGCACAAGGTCTGTGAGTACCACGCCAAAGCGCCGTTCGTACTCGTTTCAGGCAACGAACAACGATTTTGCCAGCAATGTAGCAGGTTTCATGAGCTTTCAGAGTTTGACAACTCAAAAAGGAGTTGTAGAAAGCGTTTGGCAGGGCATAATGAGAGAAGACGAAAGGTTTCATCTGATTATCATGGAGAAGGTTAA 480 0.4854 METSRAEGKRSSRYRKKEEEEEEEEDEEEEVEEDDEEETESQLGSGEEHGRKRRVMSNTYSRRGPKPGSSSAAPPSCQADDCQTDLSDAKPYHRRHKVCEYHAKAPFVLVSGNEQRFCQQCSRFHELSEFDNSKRSCRKRLAGHNERRRKVSSDYHGEG 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5456g00001 159 SUPERFAMILY SBT domain 75 155 IPR036893 GO:0003677|GO:0005634
Pral5456g00001 159 MobiDBLite consensus disorder prediction 20 42 - -
Pral5456g00001 159 Gene3D - 68 138 IPR036893 GO:0003677|GO:0005634
Pral5456g00001 159 FunFam Squamosa promoter-binding-like protein 14 68 138 - -
Pral5456g00001 159 ProSiteProfiles Zinc finger SBP-type profile. 74 151 IPR004333 GO:0003677
Pral5456g00001 159 Pfam SBP domain 77 150 IPR004333 GO:0003677
Pral5456g00001 159 MobiDBLite consensus disorder prediction 62 83 - -
Pral5456g00001 159 Coils Coil 11 39 - -
Pral5456g00001 159 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 26 150 IPR044817 GO:0003677
Pral5456g00001 159 MobiDBLite consensus disorder prediction 1 19 - -
Pral5456g00001 159 MobiDBLite consensus disorder prediction 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5456g00001 Pral-Chr5456 13419 16764 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5456g00001 68 154 SBP-box Gene Family AT2G33810 64.368 9.12e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral5456g00001 SBP 2.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5456g00001 - - qsu:112032600 183.726