Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5453g00061 ATGAAGCGCGATTTCTACGAAATCTCCGACGACGAATGGGAGAACCATTCCTTTAAGCCCTCGCGAGTTTTGAAGAAGTCACAGACTTCTGCTCCGCCTCCGATCGAGTCCTTTGCTTTTCGGCCTGTCAAGCAGGACAATTCTGATCAAAGCAGCGATGACTGCGTCCAAGTGGAAGAGAATTTGGAGGATGAGGATGTGGAGCTGGAGGAAGACAAGTCTGGGGCAGCGGCAAATCGTGGCCGTCGGTTCGTTGTCGACGACGAGGAGAGCGATAAGGATGTTGCAGAAGTGTATGAAATAAAATCATCGGATGAGGATGAAATAGAAGAGGAGGAAGCGGATGAAAACGATGTAGTGGGGAGGGCTTTGTATAAATGTGCAAAAATATCTGCAGAATTGAAAAGAGAGCTATATGGGTCATCGGGGACTACTTGCGATCGGTATTCTGAGGCAGAATCTTCTTCAGTGAGAATTGTAAATCAGGATGATATTGATGTGGCATGTGGGTCTGAGGACTCTGATTTTCAGCCTATCCTTAAGCCATATCAGCTGGTTGGTGTCAACTTTTTGCTTTTGTTGTATCGGAAAGGCATTGGAGGAGCCATATTGGCAGATGAAATGGGTCTTGGGAAAACGGTTCAGGCTATCACATATCTAACCTTGTTGAAACACCTTCACAATGATCCCGGTCCTCATCTTATAGTATGTCCTGCTTCTGTTTTGGAAAATTGGGAAAGGGAGATGCGAAGGTGGTGCCCATCCTTTTCTGTTCTCCAATACCATGGCGCTGGACGAGCAACATACTTCAAGGAGTTAAGCTATTTGTCTAAGGCGGGATTACCTCCTCCATTTAATGTTCTTCTTGTCTGCTATTCACTTTTTGAACGGCACAGTGCACAGCAGAAAGATGATCGCAAAATTCTGAAGCGTTGGAAGTGGAGCTGTGTTTTGATGGATGAGGCACATGCTTTGAAGGATAAGAATAGCTATAGGTGGAAGAATCTAATGTCTGTTGCACGCAATGCAAACCAGCGTTTGATGCTGACGGGGACACCCCTTCAAAATGATCTTCATGAATTATGGTCATTGTTGGAGTTCATGATGCCAGATATTTTTGCTACAGAAGATGTTGACTTGAAAAGGTTACTGAACACAGAAGATGGAGATTTAGTTGGTCGCATGAAGTCCATTTTGGGGCCATTTATTTTACGGCGACTAAAATCTGATGTGATGCAGCAGCTTGTTCCTAAAATCCAACGAGTTGAATATGTTGTAATGGAAGTGCAACAGGAAAATTCTTATAAGGAAGCCATTCAGGAGTATCGTGCTATTTCACAAGCTCGAATGGCAAAATGTTCAGGGCCTAACTCTAATAATATTCTTGAAGTTCTTCCTCGTCGACAAATTAACAATTATTTTGTTCAGTTTCGCAAGATTGCAAATCATCCCTTGTTGATTAGGCGAATCTATAGTGATGAGGATGTCATTCGCTTTGCTAGGAAGTTGCATCCGGTGGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATTGAGGAACTTAAAAGTTACAATGACTTCTCTATTCACCGGCTTTTACTTCATTATGGTGTCAATGATAGAAAGGGTATCCTTCCAGATAGAAGTGTTATGTCTTCTGCAAAATGTCGGGCCTTAGCAGACCTTCTTCCTTCACTTCAAAATGGCGGTCATCGGGTTTTAATATTTAGTCAGTGGACATCTATGCTCGATATATTGGAGTGGTCACTTGATGTCATGGGTTTGACCTACAGACGGCTTGATGGAAGTACGCAGGTGACAGAGAGGCAAACAATAGTTGATACGTTCAATAATGATACTTCTATATTTGCTTGCTTGCTTTCTACAAGAGCTGGAGGACAAGGCTTGAACTTGACAGGAGCTGATACTGTTGTAATTCATGACATGGATTTCAATCCACAGATTGATAGACAGGCAGAAGATCGTTGCCATAGGATAGGTCAAACGAAGCCTGTAACTATATATCGGCTGGTGACCAAGGGTACAGTTGATGAAAATGTATACGAGATTGCCAAAAGAAAGCTTGTGTTGGATGCTGCGGTCCTTGAATCTGGCATGGAGATGGATGATAAAGGTGACATGCCTGAGAAGACCATGGGAGAGATATTATCTGCAATTCTTTTGGGTTAA 2193 0.43 MKRDFYEISDDEWENHSFKPSRVLKKSQTSAPPPIESFAFRPVKQDNSDQSSDDCVQVEENLEDEDVELEEDKSGAAANRGRRFVVDDEESDKDVAEVYEIKSSDEDEIEEEEADENDVVGRALYKCAKISAELKRELYGSSGTTCDRYSEAESSSVRIVNQDDIDVACGSEDSDFQPILKPYQLVGVNFLLLLYRKGIGGAILADEMGLGKTVQAITYLTLLKHLHNDPGPHLIVCPASVLENWEREMRRWCPSFSVLQYHGAGRATYFKELSYLSKAGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDIFATEDVDLKRLLNTEDGDLVGRMKSILGPFILRRLKSDVMQQLVPKIQRVEYVVMEVQQENSYKEAIQEYRAISQARMAKCSGPNSNNILEVLPRRQINNYFVQFRKIANHPLLIRRIYSDEDVIRFARKLHPVGAFGFECTLDRVIEELKSYNDFSIHRLLLHYGVNDRKGILPDRSVMSSAKCRALADLLPSLQNGGHRVLIFSQWTSMLDILEWSLDVMGLTYRRLDGSTQVTERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLVLDAAVLESGMEMDDKGDMPEKTMGEILSAILLG 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5453g00061 730 SMART helicmild6 585 668 IPR001650 -
Pral5453g00061 730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 559 721 IPR001650 -
Pral5453g00061 730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 193 371 IPR014001 -
Pral5453g00061 730 SMART ultradead3 176 381 IPR014001 -
Pral5453g00061 730 PANTHER SNF2/RAD54 HELICASE FAMILY 46 708 - -
Pral5453g00061 730 MobiDBLite consensus disorder prediction 62 81 - -
Pral5453g00061 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 406 IPR027417 -
Pral5453g00061 730 CDD SF2_C_SNF 546 679 - -
Pral5453g00061 730 Pfam SNF2-related domain 200 486 IPR000330 GO:0005524|GO:0140658
Pral5453g00061 730 FunFam Protein CHROMATIN REMODELING 19 isoform A 151 429 - -
Pral5453g00061 730 CDD DEXHc_Snf 180 373 - -
Pral5453g00061 730 MobiDBLite consensus disorder prediction 20 56 - -
Pral5453g00061 730 Gene3D - 161 431 IPR038718 -
Pral5453g00061 730 Gene3D - 542 725 IPR027417 -
Pral5453g00061 730 Pfam Helicase conserved C-terminal domain 556 668 IPR001650 -
Pral5453g00061 730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 312 709 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5453g00061 Pral-Chr5453 325829 332008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5453g00061 201 695 RAD5 or RAD16-like Gene Family AT5G22750 27.922 9.25e-48 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5453g00061 SNF2_N 1.1e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5453g00061 K14439 - qsa:O6P43_026001 1231.47