Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5453g00058 ATGGTGGCTGGCGCGCAGCAGCAGCAGCAGCATCAACCACAACCTCAATCGCAGCAAGAGACTCAGCAAACTACGACCTCTGCGCAAGATGAGGCCTTAAAGAGGAACACGGATTGCGTCTACTTTCTTGCCTCCCCCTTGACATGCAAAAAGGGAAGTGAATGTGAGTATCGCCATAGCGAGTATGCTCGGGTTAATCCCCGAGATTGTTGGTATTGGTTGAACGGTAATTGCTTGAATCCCAAATGTTCCTTCCGTCATCCGCCTCTTGATAGCTTCTTATCACCACAGGCAGCCACTGCTGGTGGATCATCTGCACCCCCACCACAGACTGCACCAACTTCTGTACCACACGCACCTTATAATTCTACAAAGCAAGCTGTCCCTTGCATTTTCTTCCAGAAAGGGCTTTGCTTAAAAGGTGACCGATGTGCTTTTTTGCATGGACCAAATCCTAACACCAGCAGTAAAGTTCCTCAGGTTCAGGCGACAAACCAGGTTACTGAGCCTCCAAGTTTTAAGAAGGTTTTTAGTGGCCCAGAAAAGTCAACACAAGAAAGGAAAATTTCCCAGGCAAACTTTACAAAGCCAGTTACAGGTGTTGAAGCTAAGCCTGCAAATGTTGGAACTGCTTCGCATAGAAATGTGGTTGCTGTAGAGAGGCATGCACCACCACCAATGGGATTTGATAATGAGGCATCTAGATTTAAGGTAGTAAGTACTCCGCCTGTCACCAATGGAACCACTGTTGCCAGGCCAAACCGTGCATATCAATCTCATGTAACGGATGATCATAGTTTCCACAATGGCAAGGAAAGTGATGAGTTTTTGAGAGAATCCTCACCTGGCTTTGATGTACTTGTTGCTGATGAGCTGAGGAATTCAGATTACTATGATGGAGAAGACCAATTTGGAAAAGCAAGAGGTCAAGATGGGATGAACTTGGACTCTGTGAATGAATATGATTTAGGACATTCTGTAGATTATAAATCTGTAGCTGATATTGACCAAGACAGATATTGTGGACCACAAGGTTATGATTCATACGATCACATGCAAGAGACATATGCGTGGGATCAGCGCAGGAATTCATCAGAAAGAATATTCCGGGCAACAACACATTTAGATAGGATGACTCATCGCAGATCTGGCAGTCCTGAAAATGTGGGGGTTTCAGATCTTCGACATCGTTTATCTAAGCGCAGGAGGGTCAATGGTTTGAAATCTGTTGTGAGTCATGATTATACGCATCAGAGCCATGATGATGAGCAAAGTCACCGGTTCTCTTCTCAGAAGGATGTTCACCAGTTACCTCTGAATGAAAGTGCTCTCAGTAATCGCTTCCGAGGCAGGATAAAGCTTCCAGCAGATGGTGGGGATGAATATGTGGAGAGGGAATCAGACAGGGGAAGAAATAGAAGCACGTTGTCACCTGGAACCATGCAGACTCCTCAAGCAGGTAAGTTCCGAGATAGACTGAGAGGAAGGGTGCAAGAAGATTTTGAGAGGAAAAACTTCAGGGATCGCCCTATAAGGAAAGAAATAAGTGGGGACGAACATGCTGATTTTGATGGACCAAAAAGTCTTGCTGAACTGCGAAATGGAAAGAATAATCGGAACAAGGAGCATCAGTTGCTTGGGAAGAGAAAAAGTTTAAAGGAACAACAACAATCCGAAGATGATTTCATGTTTGAAGGTCCAAAACCTCTTAGTGAGATTTTGAAGGAGAAGAGAGCAGCTGGAGTTGAAGCAGCTTCCAAGAGTGGCAAATCGTCTGAGAATAGAGGAGACAATAAAGACAGAGAAGTTACTAATGGCTCGGAATACACCTCTGTCATGGATGCACGAAATGGCACTTTTCCTGCAAATAAGGAAGATGTTAAGAACGAGGAATCCAAGTTTGAGGCAATCGAGAACACGGTTGAAGAAGGAACGATGGACAACGAAGTGATAGAAGACCAGGAGTTTGAAGGAGATGATCAGAAGGATGGTGATTATTACTATGAGCAAGTTGACGAGGGAGACTACAATTATGATGAAGGCGAAAATCCAGAGCAGGAAGAATACATGGATGATGAGGAGGATGGGGATGACTTTGCTAAGAAGATTGGTGTTATGCTCACATGA 2127 0.4457 MVAGAQQQQQHQPQPQSQQETQQTTTSAQDEALKRNTDCVYFLASPLTCKKGSECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDSFLSPQAATAGGSSAPPPQTAPTSVPHAPYNSTKQAVPCIFFQKGLCLKGDRCAFLHGPNPNTSSKVPQVQATNQVTEPPSFKKVFSGPEKSTQERKISQANFTKPVTGVEAKPANVGTASHRNVVAVERHAPPPMGFDNEASRFKVVSTPPVTNGTTVARPNRAYQSHVTDDHSFHNGKESDEFLRESSPGFDVLVADELRNSDYYDGEDQFGKARGQDGMNLDSVNEYDLGHSVDYKSVADIDQDRYCGPQGYDSYDHMQETYAWDQRRNSSERIFRATTHLDRMTHRRSGSPENVGVSDLRHRLSKRRRVNGLKSVVSHDYTHQSHDDEQSHRFSSQKDVHQLPLNESALSNRFRGRIKLPADGGDEYVERESDRGRNRSTLSPGTMQTPQAGKFRDRLRGRVQEDFERKNFRDRPIRKEISGDEHADFDGPKSLAELRNGKNNRNKEHQLLGKRKSLKEQQQSEDDFMFEGPKPLSEILKEKRAAGVEAASKSGKSSENRGDNKDREVTNGSEYTSVMDARNGTFPANKEDVKNEESKFEAIENTVEEGTMDNEVIEDQEFEGDDQKDGDYYYEQVDEGDYNYDEGENPEQEEYMDDEEDGDDFAKKIGVMLT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5453g00058 708 SUPERFAMILY CCCH zinc finger 125 149 IPR036855 GO:0046872
Pral5453g00058 708 MobiDBLite consensus disorder prediction 96 119 - -
Pral5453g00058 708 FunFam Zinc finger CCCH domain-containing protein 17 27 90 - -
Pral5453g00058 708 Gene3D - 120 191 - -
Pral5453g00058 708 MobiDBLite consensus disorder prediction 1 29 - -
Pral5453g00058 708 ProSiteProfiles Zinc finger C3H1-type profile. 33 62 IPR000571 GO:0046872
Pral5453g00058 708 MobiDBLite consensus disorder prediction 645 660 - -
Pral5453g00058 708 Pfam Zinc-finger containing family 34 90 IPR041686 -
Pral5453g00058 708 Gene3D - 20 91 - -
Pral5453g00058 708 MobiDBLite consensus disorder prediction 378 708 - -
Pral5453g00058 708 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 150 IPR000571 GO:0046872
Pral5453g00058 708 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Pral5453g00058 708 SMART c3hfinal6 66 89 IPR000571 GO:0046872
Pral5453g00058 708 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Pral5453g00058 708 MobiDBLite consensus disorder prediction 590 604 - -
Pral5453g00058 708 MobiDBLite consensus disorder prediction 453 472 - -
Pral5453g00058 708 MobiDBLite consensus disorder prediction 489 561 - -
Pral5453g00058 708 ProSiteProfiles Zinc finger C3H1-type profile. 64 90 IPR000571 GO:0046872
Pral5453g00058 708 ProSiteProfiles Zinc finger C3H1-type profile. 124 151 IPR000571 GO:0046872
Pral5453g00058 708 MobiDBLite consensus disorder prediction 414 430 - -
Pral5453g00058 708 MobiDBLite consensus disorder prediction 670 695 - -
Pral5453g00058 708 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 30 706 - -
Pral5453g00058 708 MobiDBLite consensus disorder prediction 621 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5453g00058 Pral-Chr5453 294899 298764 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral5453g00058 zf-CCCH_3 1.8e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5453g00058 - - gmx:102669253 811.216