Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5453g00057 ATGGGTGATGAAGAAAGTGGTGGGAATTCTGTAGCAACCTCTTCTGCAACTCCATTAATAAACTGGTGGGATCTTCATGCAAATTCACTTTCTTCCTGGAACACTCATCATCATCAACCTTCTGCAAAACCTCATTCCAATTCCTCCTCCTGTTGTGAAGATCAAGACATCTCAGTCTCCACATCTTTCGCCGTCGACGAATCCCCTCATCGCCGCCTCGTCGACCTTTCTGCGCCTTCGCCTGACAATAATCACCTCTGGACTCACGTCTTATTAGGTGTTGGAAGCAACGAGGAGCTGCAAAATAGTGAAGCTGGAGGGGAGAACTTGATGGATGCAGTGTCATGTAAAAGCATGATGTACGAACCAGCCTGCAACTACTTGAAGAAACTTGATACCACTTGGGAATACAACCATACTAATAACAGCGATTCTTCATCTGCTTCTTTTGATCATCAGAAACAATTCAATGGTTTCAACGAGGCCGTGCTTGATCAGAGTGAAAGATTGAGCAAGCTGGTTAAGCAAGAACATCATCATCATGCGATCGGATATCAGAACAACGGATTTAACAGTCAGTATGGGATGCCGGCCAGTTTGTCTTCATCGTGTTCAAGAAATTTGACAGATGTTATATCTTTTACGGGAAGGATAGGCCGGCCGATTATCGGAATTCATGCACTGAAACCCAGTTTCAGACCACCTTCGATGAATACTGTATCTGACTCCAAGAAACACACTTTTCAGACATCACTGCCGACAAGGACAAACAATGGAAGAGGACAAGGGAGCTCCACTGAGGTAAAGAAGAAAAGAACAGATGACTCATCATCAGAAGCAATCTCGAAGAAGCCAAAGCAAGAGACATCTACGGCATCTTCTGCAAAGATGCAAGCACCAAAAGTCAAGCTAGGCGACAGGATTACAACCCTTCAGCAAATTGTGTCGCCATTTGGAAAGACGGACACTGCATCAGTGCTTTTTGAAGCAATTGGGTACATAAAGTTTTTACAAGAACAAGTGCAGGTGCTACTGAGCAACTCTTACACGAAGACTAACTCGCATCACAAGGAAACATGGGGAAGCATGGAGAGGAAATTAGAAGAGAAGGGAGACCTGAAGAGCAGAGGGCTTTGTCTGGTTCCAATTTCATGGACTCCTCAGGCTTACAGAGACAGCACTGCCCCTGACTACTGGACTCCTGCTTATCGAGGCTGCTTGTTTAGGTAG 1230 0.4512 MGDEESGGNSVATSSATPLINWWDLHANSLSSWNTHHHQPSAKPHSNSSSCCEDQDISVSTSFAVDESPHRRLVDLSAPSPDNNHLWTHVLLGVGSNEELQNSEAGGENLMDAVSCKSMMYEPACNYLKKLDTTWEYNHTNNSDSSSASFDHQKQFNGFNEAVLDQSERLSKLVKQEHHHHAIGYQNNGFNSQYGMPASLSSSCSRNLTDVISFTGRIGRPIIGIHALKPSFRPPSMNTVSDSKKHTFQTSLPTRTNNGRGQGSSTEVKKKRTDDSSSEAISKKPKQETSTASSAKMQAPKVKLGDRITTLQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQVLLSNSYTKTNSHHKETWGSMERKLEEKGDLKSRGLCLVPISWTPQAYRDSTAPDYWTPAYRGCLFR 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5453g00057 409 Gene3D - 298 361 IPR036638 GO:0046983
Pral5453g00057 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 303 348 IPR036638 GO:0046983
Pral5453g00057 409 MobiDBLite consensus disorder prediction 229 300 - -
Pral5453g00057 409 MobiDBLite consensus disorder prediction 265 282 - -
Pral5453g00057 409 MobiDBLite consensus disorder prediction 234 264 - -
Pral5453g00057 409 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 89 388 - -
Pral5453g00057 409 MobiDBLite consensus disorder prediction 33 53 - -
Pral5453g00057 409 CDD bHLH_AtbHLH_like 303 344 IPR045239 -
Pral5453g00057 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 337 IPR011598 GO:0046983
Pral5453g00057 409 MobiDBLite consensus disorder prediction 283 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5453g00057 Pral-Chr5453 289234 292026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5453g00057 16 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 31.788 5.25e-35 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5453g00057 - - pcin:129311824 494.582