Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5453g00055 ATGGGTGATGAAGAAAGTGGTGGGAATTCTGTAGCAACCTCTTCTGCAACTCCATTAATAAACTGGTGGGATCTTCATGCAAATTCACTTTCTTCCTGGAACACTCATCATCATCAACCTTCTGCAAAACCTCATTCCAATTCCTCCTCCTGTTGTGAAGATCAAGACATCTCAGTCTCCACATCTTTCGCCGTCGACGAATCCCCTCATCGCCGCCTCGTCGACCTTTCTGCGCCTTCGCCTGACAATAATCACCTCTGGACTCACGTCTTATTAGGTGTTGGAAGCAACGAGGAGCTGCAAAATAGTGAAGCTGGAGGGGAGAACTTGATGGATGCAGTGTCATGTAAAAGCATGATGTACGAACCAGCCTGCAACTACTTGAAGAAACTTGATACCACTTGGGAATACAACCATACTAATAACAGCGATTCTTCATCTGCTTCTTTTGATCATCAGAAACAATTCAATGGTTTCAACGAGGCCGTGCTTGATCAGAGTGAAAGATTGAGCAAGCTGGTTACCACTTGGTCCATTGCACCACCAGACCGACAAGTTCATAATCATAATCATAATCATAATAATTCTACCCACTTTGATCCTCATCAAACACACAACAATAATGATTTGAATTCTTCGATGGATCATTCTGGGGTTTTTTCTTCATACGGTGCTCTTGACATGAAGGTTAAGCAAGAACATCATCATCATGCGATCGGATATCAGAACAACGGATTTAACAGTCAGTATGGGATGCCGGCCAGTTTGTCTTCATCGTGTTCAAGAAATTTGACAGATGTTATATCTTTTACGGGAAGGATAGGCCGGCCGATTATCGGAATTCATGCACTGAAACCCAGTTTCAGACCACCTTCGATGAATACTGTATCTGACTCCAAGAAACACACTTTTCAGACATCACTGCCGACAAGGACAAACAATGGAAGAGGACAAGGGAGCTCCACTGAGGTAAAGAAGAAAAGAACAGATGACTCATCATCAGAAGCAATCTCGAAGAAGCCAAAGCAAGAGACATCTACGGCATCTTCTGCAAAGATGCAAGCACCAAAAGTCAAGCTAGGCGACAGGATTACAACCCTTCAGCAAATTGTGTCGCCATTTGGAAAGACGGACACTGCATCAGTGCTTTTTGAAGCAATTGGGTACATAAAGTTTTTACAAGAACAAGTGCAGGTGCTACTGAGCAACTCTTACACGAAGACTAACTCGCATCACAAGGAAACATGGGGAAGCATGGAGAGGAAATTAGAAGAGAAGGGAGACCTGAAGAGCAGAGGGCTTTGTCTGGTTCCAATTTCATGGACTCCTCAGGCTTACAGAGACAGCACTGCCCCTGACTACTGGACTCCTGCTTATCGAGGCTGCTTGTTTAGGTAG 1398 0.4421 MGDEESGGNSVATSSATPLINWWDLHANSLSSWNTHHHQPSAKPHSNSSSCCEDQDISVSTSFAVDESPHRRLVDLSAPSPDNNHLWTHVLLGVGSNEELQNSEAGGENLMDAVSCKSMMYEPACNYLKKLDTTWEYNHTNNSDSSSASFDHQKQFNGFNEAVLDQSERLSKLVTTWSIAPPDRQVHNHNHNHNNSTHFDPHQTHNNNDLNSSMDHSGVFSSYGALDMKVKQEHHHHAIGYQNNGFNSQYGMPASLSSSCSRNLTDVISFTGRIGRPIIGIHALKPSFRPPSMNTVSDSKKHTFQTSLPTRTNNGRGQGSSTEVKKKRTDDSSSEAISKKPKQETSTASSAKMQAPKVKLGDRITTLQQIVSPFGKTDTASVLFEAIGYIKFLQEQVQVLLSNSYTKTNSHHKETWGSMERKLEEKGDLKSRGLCLVPISWTPQAYRDSTAPDYWTPAYRGCLFR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5453g00055 465 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 393 IPR011598 GO:0046983
Pral5453g00055 465 MobiDBLite consensus disorder prediction 339 353 - -
Pral5453g00055 465 MobiDBLite consensus disorder prediction 186 206 - -
Pral5453g00055 465 MobiDBLite consensus disorder prediction 290 320 - -
Pral5453g00055 465 MobiDBLite consensus disorder prediction 33 53 - -
Pral5453g00055 465 MobiDBLite consensus disorder prediction 284 356 - -
Pral5453g00055 465 CDD bHLH_AtbHLH_like 359 400 IPR045239 -
Pral5453g00055 465 Gene3D - 354 417 IPR036638 GO:0046983
Pral5453g00055 465 MobiDBLite consensus disorder prediction 321 338 - -
Pral5453g00055 465 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 156 444 - -
Pral5453g00055 465 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 404 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5453g00055 Pral-Chr5453 289233 292026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5453g00055 16 465 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G31050 33.402 5.39e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5453g00055 - - pcin:129311824 625.165