Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5453g00048 ATGCAGAAAATATGGCTTCTTGTGCTTGTGATTTTCTACTGCGGCATTTATTCAAACGGATTAAGCGGTGTTCCTGCAAGACCTGGTGTCGTCAACATTGGGGCAATTCTATCTTTCAATTCAACCGCTGGCAAAGTTGCAAAAGTTGCAATTGATGCGGCAAAGGATGATATAAACTCCAATCCATCAGTTCTTAATGGAACTAAACTTAATATTTCATTCCAGGACACCAAATTCTCCACTGGTTTTCTCGGCATCATTGACTCATTATTATTGATGGAGAATGATACAGTGGCCATAATTGGCCCCCAATACTCAGTGATGGCTCATGTGATTTCACACATAGCCAATGAACTGCAAGTACCGTTACTATCATTTGCGGCAACAGACCCTACCTTGACTTCTCTTCAGTTCCCATATTTTGTTAGGACAACACATAGTGATCAATTTCAGATGGCTGCCATGGCAGATATTGTTGACTACTATCAATGGAGAGATGTGATAGCAATCTACATCGATGATGATCATGGAAGAAATGGGATAGTTGCATTAGAAGATAAGCTCGCTGAGAAACGTTGTAAGATCTCATATAAAGCCCCTCTTATGCCTAATAACATAAGCAGGGAAGAAATAAACAATGCATTAGTTAAGGTCATTATAAGGGAGTCCAGGGTTATAGTCCTACACATATACCCTAGTTTTGGTGTAGATGTACTTCATGTGGCTAAGTCACTAGGCATGTTGGGAAGCGGGTATGTCTGGTTGGCCACTGATTGGCTTTCCACAGTCCTAGATACTGATCCAACTAGGTCATCTTCATACATGAATGACCTTCAAGGTGTTATAACCTTGAGAATGTACACACCTGATTCTGGAACGAAAAAGAATTTATCTTCCAGGTGGAGTAATTTAGTACAGAAAAAAGCTCCTGATCAAAGTCCTTTCATGTGGAACACTTATGGCCTTTATGCCTATGACACTGTTTGGGTCCTTGCATATGCCCTTGATTCATTTTTCAATAGGGGAGGGACTTTATCATTTTCAAATGATTCAAGTCTAAACAAACTAACAGGGGGTAGACTGGACTTAAATTCTATAAATGTCTTTGCTAACGGGAGGTTATTGTTGGAAGAAACTATGAAGGTCAATAGAACTGGTCTAACAGGTCAAATGATGTTTAGTCCAGATGGTGAGCTTATGAATCCTTCATACGAAATCATTAATGTGATTGGTACTGGGGTTAGGAGGATTGGATTTTGGTCCAATTCCTCTGGTTTACAAACTGGACAAGCACCTGGTTATTCAAACTCAAGTAAAGGGCTTTATGGTGTGATATGGCCTGGCCAAACAACTGCAACACCTCGTGGTTGGGTTTTTGCCAACGATGGAAGGCATTTGAGAATTGGGGTGCCTCTCAGGATTAGTTACCATGAATTTGTGTCAAGAATTGAAGGATCTGAAATGTTCGGAGGTTATTGCATAGATGTGTTCAAAGCTGCACTAGACTTATTGCCTTATCCAGTTCCATACAATTTTGTCCCATTTGGAGATGGTAAAAGTAACCCATTAAACTCAGAACTTCTGCAAAAAATCACAAGTGGTGAGTTTGATGCTGTGGTAGGTGACATTACTATTACCACAAACAGAACAAAGATAGTGGATTTCACACAACCATATATTGAGTCTGGGCTAGTCGTTGTGGCTCCTATTAGAAAGTCAAATTCTAACGCGTGGGCTTTCCTAAGACCATTTACTCCAATGATGTGGTTTGTGACTGGAATGTCTTTCTTTGTTGTGGGAGCAGTTGTGTGGGTTTTAGAACGGCGAGTAAATGATGATTTTCGAGGTCCTGCTAGAAGACAGTTTGTGACCATTATATGGTTTAGTTTTTCAACCCTATTTTTTGCACATAGAGAGAGAACTTTGAGCACCCTGGGTCGCTTAGTGCTGATAATATGGCTATTTGTAGTCCTGATACTGAACTCCAGCTACATAGCAAGCCTGACCTCTATTCTCACAGTGGAACAGCTCTCTTCCCCAGTGAAAGGAATTGAGAGCTTAGTAACCAGCAAAGACCTCATTGGCTATCTACGAGGCTCATTTGCAGAGAACTACCTCATTGAAGAACTCAACATCATGAAATCCAGACTTGTGCCGCTGGATTCTCCATCAGAGTATGAGAAAGCCTTGAAGGATGGACCTGCCAATGGTGGTGTTGCAGCAATCATCGATGAACGTGCTTACATGGAGCTCTTTCTTTCAACCAGATGTGAATTTGGAATCGTTGGTCAAGAGTTCACCAAAATGGGTTGGGGTTTTGCCTTTCCTAGAGATTCTCCTTTGGCAATAGACATGTCAACAGCAATCTTAAAACTATCAGAGAATGGTGATCTTCAAAGAATACATGACAAATGGCTTTCAAGAAGTGCGTGCAGTTCAGAAGGCTCAAAGCAAGGCATAGACAGATTACAGCTAAGGAGCTTTTGGGGTCTCTTTCTTCTCTGTGGGATTTCCTGCTTCATAGCTCTGGTTTGTTATGTCATTCGCATGGCCTACCGTTTCAGCCGCCACTCCGACTGCGACCTTGCTGGCTTGTCGCACTCAACTCGAATCCGGTCATTTATTTCCTTTGTCAATGAAAAAGAAGAGGAAGGAAAGAATTGCAGCAAGCCAAGGAGAAGTAGAAAAGTAGCACATGAAGATGGGTCAATGGATGGCTCCAATACTGACGGTGTTCGTTATGAAAATGATCCTTCGTAG 2760 0.4156 MQKIWLLVLVIFYCGIYSNGLSGVPARPGVVNIGAILSFNSTAGKVAKVAIDAAKDDINSNPSVLNGTKLNISFQDTKFSTGFLGIIDSLLLMENDTVAIIGPQYSVMAHVISHIANELQVPLLSFAATDPTLTSLQFPYFVRTTHSDQFQMAAMADIVDYYQWRDVIAIYIDDDHGRNGIVALEDKLAEKRCKISYKAPLMPNNISREEINNALVKVIIRESRVIVLHIYPSFGVDVLHVAKSLGMLGSGYVWLATDWLSTVLDTDPTRSSSYMNDLQGVITLRMYTPDSGTKKNLSSRWSNLVQKKAPDQSPFMWNTYGLYAYDTVWVLAYALDSFFNRGGTLSFSNDSSLNKLTGGRLDLNSINVFANGRLLLEETMKVNRTGLTGQMMFSPDGELMNPSYEIINVIGTGVRRIGFWSNSSGLQTGQAPGYSNSSKGLYGVIWPGQTTATPRGWVFANDGRHLRIGVPLRISYHEFVSRIEGSEMFGGYCIDVFKAALDLLPYPVPYNFVPFGDGKSNPLNSELLQKITSGEFDAVVGDITITTNRTKIVDFTQPYIESGLVVVAPIRKSNSNAWAFLRPFTPMMWFVTGMSFFVVGAVVWVLERRVNDDFRGPARRQFVTIIWFSFSTLFFAHRERTLSTLGRLVLIIWLFVVLILNSSYIASLTSILTVEQLSSPVKGIESLVTSKDLIGYLRGSFAENYLIEELNIMKSRLVPLDSPSEYEKALKDGPANGGVAAIIDERAYMELFLSTRCEFGIVGQEFTKMGWGFAFPRDSPLAIDMSTAILKLSENGDLQRIHDKWLSRSACSSEGSKQGIDRLQLRSFWGLFLLCGISCFIALVCYVIRMAYRFSRHSDCDLAGLSHSTRIRSFISFVNEKEEEGKNCSKPRRSRKVAHEDGSMDGSNTDGVRYENDPS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5453g00048 919 MobiDBLite consensus disorder prediction 881 919 - -
Pral5453g00048 919 Gene3D - 577 710 - -
Pral5453g00048 919 SMART GluR_14 467 808 IPR001320 GO:0015276|GO:0016020
Pral5453g00048 919 Gene3D - 729 813 - -
Pral5453g00048 919 FunFam Glutamate receptor 147 307 - -
Pral5453g00048 919 FunFam Glutamate receptor 461 577 - -
Pral5453g00048 919 Pfam Bacterial extracellular solute-binding proteins, family 3 491 807 IPR001638 -
Pral5453g00048 919 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 31 881 IPR015683 -
Pral5453g00048 919 FunFam Glutamate receptor 577 707 - -
Pral5453g00048 919 FunFam Glutamate receptor 703 810 - -
Pral5453g00048 919 Gene3D - 461 576 - -
Pral5453g00048 919 SUPERFAMILY Periplasmic binding protein-like I 26 457 IPR028082 -
Pral5453g00048 919 MobiDBLite consensus disorder prediction 881 903 - -
Pral5453g00048 919 Gene3D - 147 426 - -
Pral5453g00048 919 Gene3D - 49 401 - -
Pral5453g00048 919 PIRSF IGluLR_plant 1 916 IPR017103 -
Pral5453g00048 919 CDD PBP1_GABAb_receptor_plant 32 426 IPR044440 -
Pral5453g00048 919 Pfam Receptor family ligand binding region 49 411 IPR001828 -
Pral5453g00048 919 SUPERFAMILY Periplasmic binding protein-like II 442 808 - -
Pral5453g00048 919 CDD GluR_Plant 466 806 - -
Pral5453g00048 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Pral5453g00048 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 324 336 - -
Pral5453g00048 919 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 44 60 - -
Pral5453g00048 919 Pfam Ligand-gated ion channel 808 838 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5453g00048 Pral-Chr5453 259897 263892 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5453g00048 5 908 Ion Channels AT3G51480 56.846 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5453g00048 K05387 - gmx:100790502 1439.48