Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5453g00035 ATGCCTAAAGCGAATAAGACCCACTCCACAGTCGACGGTAACCGGTTGAAGCGCAAGGGCGCTGGAGCAGGAAGCAAGCGGTCGAGGAAACCTGCAAAGGATCCAAACAAGCCAAAGAGGCCTCCGAGCGCTTTCTTTGTGTTTATGTCTGAGTTCAGAGAGCAGTATAAGAAGGAACATCCAGAGAATAAATCAGTCACTGCTGTCGGCAAAGCTGGCGGTAATGAATGGAAAGCCATGTCTGATGCTGACAAAGCTCCCTATATTGCCAAGGCAGAGAAGAAGAAAGCGGAATACGAGAAAACTATTAAAGCGTACAATATGAGATTGGCTGAGGGCAAAAATCCTTCAGAGCAAACAGAGTCTGATAAATCAAACTCAGAAGTCAATGACGATGATAAAGACGACGAAGAGGAGGAAGAGGCGGACGAGTGA 435 0.4713 MPKANKTHSTVDGNRLKRKGAGAGSKRSRKPAKDPNKPKRPPSAFFVFMSEFREQYKKEHPENKSVTAVGKAGGNEWKAMSDADKAPYIAKAEKKKAEYEKTIKAYNMRLAEGKNPSEQTESDKSNSEVNDDDKDDEEEEEADE 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5453g00035 144 Coils Coil 89 109 - -
Pral5453g00035 144 MobiDBLite consensus disorder prediction 130 144 - -
Pral5453g00035 144 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 38 107 IPR009071 -
Pral5453g00035 144 MobiDBLite consensus disorder prediction 110 144 - -
Pral5453g00035 144 Pfam HMG (high mobility group) box 38 107 IPR009071 -
Pral5453g00035 144 SUPERFAMILY HMG-box 25 109 IPR036910 -
Pral5453g00035 144 Gene3D High mobility group box domain 22 125 IPR036910 -
Pral5453g00035 144 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 7 141 IPR031061 -
Pral5453g00035 144 SMART hmgende2 37 108 IPR009071 -
Pral5453g00035 144 MobiDBLite consensus disorder prediction 1 44 - -
Pral5453g00035 144 CDD HMG-box_AtHMGB1-like 39 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5453g00035 Pral-Chr5453 167576 169872 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Pral5453g00035 HMG_box 6e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5453g00035 K25507 - gmx:100499992 155.221