Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5453g00019 | ATGGTGATTTCTCGTGAGAACAATGTGAACTCCATCAAACCCACAAGCCTGCAAGGAGGAGTGGTCGGAGAGAATAGAAGGGCACTGAGCGTCATCAATCAGAACCTGGTCGTGGAGTGTGGACACAACAAGAAGATTGCCAATCCAGTGCATCGACCAATTACCAGGAAATATGCAGCACAAATTGCTCCCACAAAGCGGCCACTCGCCGAGGAAGATAAGAAGTCGAATAATGCATCAAGTTTAAATTCAAATGGATTTGGAGAATGCATATTTTTGGATGAAGAACACAAGTCAGTGAAGGACCAGCCGGTACCCATGTCTTTAGAACAATCAGAAGAAGAAATGCAGACTGAAACAGATCAGATGAAGGAAGTTGAGATGGAGGATATAGTTGAAGATCCTATCATGGACATTGATTGCAGTGACGTGAGCAATCATCTTGCAGCTGTAGACTATGTTCAAGAACTTTATTCTTACTACAGAAAAATGGAGATTAGTAGCTGCGTCTCACCACATTATATGTCACAACAAGTTGACATTAATGAAAGGATGAGGGCTATACTGATTGACTGGCTCATTGAGGTGCAAGACAAGTTTGATCTTATGCGTGAGACTTTGTTTCTTACAGTGAACCTAATAGATAGGTTTTTGGAGAAGCAATCAGTGGTAAGGAAGAGGCTTCAATTGGTGGGTTTAGTGGCCATGCTTTTGGCATGCAAGTATGAGGAAGTTTCGGTTCCTGTGGTGGAGGATCTGATACTTATATCAGACAAAGCATATACAAGGAAAGAAATTCTTGAAATGGAGAAGTTGATGCTTAGCACATTGCAGTTTAACATGACTGTGCCCACACCATATGTGTTTATGAGACGGTTTCTAAAGGCTGCTCAAGCAGATAAAAAAATGGAGTTGCTAGCTTTCTTCTTAATAGAGATATCTCTTGTGGAGTATGGGATGTTGAAGTTCCCACCATCTTTGCTAGCTGCAGCTGCAATTTTTACAGCTCAATGCACCATCTATGGTTTCCAGCAATGGAACAAGACATGCGAATGGCACACAAACTACTCAGAAGATCAGCTATTGGAATGCTCTAAATTGATGGTTGATTTGCACCAAAGGGCTGAAAAGGGAAAACTAACTGCTGTACATAGGAAGTATTGTACATCTAAACTCAACTATACTTCAAAATGTGAACCAGCAAGTTTTCTTGTGGCGAACCAATTATAG | 1230 | 0.4122 | MVISRENNVNSIKPTSLQGGVVGENRRALSVINQNLVVECGHNKKIANPVHRPITRKYAAQIAPTKRPLAEEDKKSNNASSLNSNGFGECIFLDEEHKSVKDQPVPMSLEQSEEEMQTETDQMKEVEMEDIVEDPIMDIDCSDVSNHLAAVDYVQELYSYYRKMEISSCVSPHYMSQQVDINERMRAILIDWLIEVQDKFDLMRETLFLTVNLIDRFLEKQSVVRKRLQLVGLVAMLLACKYEEVSVPVVEDLILISDKAYTRKEILEMEKLMLSTLQFNMTVPTPYVFMRRFLKAAQADKKMELLAFFLIEISLVEYGMLKFPPSLLAAAAIFTAQCTIYGFQQWNKTCEWHTNYSEDQLLECSKLMVDLHQRAEKGKLTAVHRKYCTSKLNYTSKCEPASFLVANQL | 409 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5453g00019 | 409 | SMART | Cyclin_C_2 | 284 | 401 | IPR004367 | - | |
| Pral5453g00019 | 409 | Coils | Coil | 109 | 129 | - | - | |
| Pral5453g00019 | 409 | Pfam | Cyclin, C-terminal domain | 284 | 399 | IPR004367 | - | |
| Pral5453g00019 | 409 | FunFam | G2/mitotic-specific cyclin-1 | 260 | 396 | - | - | |
| Pral5453g00019 | 409 | CDD | CYCLIN_AtCycB-like_rpt1 | 133 | 279 | - | - | |
| Pral5453g00019 | 409 | PANTHER | CYCLINS | 114 | 380 | IPR039361 | - | |
| Pral5453g00019 | 409 | Pfam | Cyclin, N-terminal domain | 157 | 281 | IPR006671 | - | |
| Pral5453g00019 | 409 | ProSitePatterns | Cyclins signature. | 186 | 217 | IPR006671 | - | |
| Pral5453g00019 | 409 | SMART | cyclin_7 | 288 | 370 | IPR013763 | - | |
| Pral5453g00019 | 409 | SMART | cyclin_7 | 191 | 275 | IPR013763 | - | |
| Pral5453g00019 | 409 | Gene3D | - | 170 | 282 | - | - | |
| Pral5453g00019 | 409 | SUPERFAMILY | Cyclin-like | 145 | 281 | IPR036915 | - | |
| Pral5453g00019 | 409 | CDD | CYCLIN_AtCycB-like_rpt2 | 284 | 400 | - | - | |
| Pral5453g00019 | 409 | SUPERFAMILY | Cyclin-like | 283 | 401 | IPR036915 | - | |
| Pral5453g00019 | 409 | PIRSF | Cyclin_A_B_D_E | 3 | 409 | IPR046965 | GO:0016538|GO:0044772 | |
| Pral5453g00019 | 409 | Gene3D | - | 157 | 397 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5453g00019 | Pral-Chr5453 | 91746 | 95738 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5453g00019 | 1 | 405 | Core Cell Cycle Gene Families | AT1G20610 | 54.630 | 1.30e-157 | 449 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5453g00019 | K21777 | - | gmx:100798068 | 580.867 |