Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5453g00015 ATGGCCAAAAGATCATTCAAAAGCGAAGAAGAAGAAGATCGCGATACGAAGAAGAAGAAGAAGATAGTGATAAGGGTGGTTTTTGGGGCAAGGACGAAGACAGAGATGGGGGGTGAGAGTGAGGGGTCAATGCTGCGTTGTCAAGCAGACGAATGTGGAGTGGACTTGACAATGGCGAAGAAGTATCACCAGAGGCACAGGGTTTGTGACAGACATTCCAAAGCTTCTGTGGTTCTAGTTTTTGGCATTCGTCAGAGATTCTGTCAACAGTGCAGCAAGTTTCATGAAGTGGCACAGTTCGATGGCAGCAAAAGGAGTTGCAGGGAAAGACTGGCAGGTCATAACCAACGTCGAAGAAAAACCTACTCACACGTTCCCTCTGCCTCAACCACTCCCGCTTATTCAAATCATCAGATTCTCCATTCTGATGAGCATGGAACACGTGAGGGTTCGATTTCGTTTTAG 465 0.4688 MAKRSFKSEEEEDRDTKKKKKIVIRVVFGARTKTEMGGESEGSMLRCQADECGVDLTMAKKYHQRHRVCDRHSKASVVLVFGIRQRFCQQCSKFHEVAQFDGSKRSCRERLAGHNQRRRKTYSHVPSASTTPAYSNHQILHSDEHGTREGSISF 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5453g00015 154 SUPERFAMILY SBT domain 45 123 IPR036893 GO:0003677|GO:0005634
Pral5453g00015 154 Gene3D - 38 108 IPR036893 GO:0003677|GO:0005634
Pral5453g00015 154 Pfam SBP domain 47 120 IPR004333 GO:0003677
Pral5453g00015 154 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 24 122 IPR044817 GO:0003677
Pral5453g00015 154 MobiDBLite consensus disorder prediction 122 140 - -
Pral5453g00015 154 ProSiteProfiles Zinc finger SBP-type profile. 44 121 IPR004333 GO:0003677
Pral5453g00015 154 MobiDBLite consensus disorder prediction 111 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5453g00015 Pral-Chr5453 75897 76567 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5453g00015 47 120 SBP-box Gene Family AT3G15270 67.568 3.63e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral5453g00015 SBP 2.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5453g00015 - - qsu:112040672 148.673