Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5452g00042 ATGTCGGAGAACGGCGGCGAGACGGGGATAATTTATCTTCACGGCGACCTGGACTTGACCATCTTTGAGGCTCGAAACTTGCCCAACATGGATGTTTTCTCTCAGCATTTCCGCCGTTGTGTCACCGCCTGTGACACTGTCAAGTTCCATTCCGTTGACGACGTGAAGACCCGCCGTCGCCGGAGGATTATCACTAGCGACTCATACGTCACCGTCTCGGTGCCGCAGTCTACTGTTGCTCGCACGCGTGTGATAAAGAATATGCCGAACCCTCAGTGGAACGAGCGGTTCAGTATCCCCTTGGCGCACCCCGTGGAGCATTTGGAATTTCGAGTCAAAGACGACGACGTATTTGGTGCTCAGGTTGTGGGAACTGTGAATATTCCTGCACATAGAATTGCCTCCGGTGAGTTTATCGCCGGATGGTTCCCCATTCTTGGTTCTTCCGGTAAGCCTACCAAGCCAGACACTGCTCTTCGTATAGAAATGAAGTTCGTAGCCGTGGAAGAGAACTTGTTGTACCGACGAGGCATTGCGGCTGATCCAGAACACAAGGGCGTGATGCAAACGTATTTTCCTCTGCGGAAGGGAAGCTCGGTGAGGTTGTACCAAGATGCCCATGTTCCTAATGGCATCCTACCTGAGATAAAGCTAGAGGGGGGAGAGGTTTACAAGCATGGAACATGTTGGGAGGATATTTGTTATGCTATATCTGAGGCTCATCATATGGTTTATCTCGTGGGTTGGTCAATCTACCACAAAGTAAGGATTGTGAGGGAACCTAGCAGGCCTTTGCCACGAGGTGGGGATTTAACTCTCGGAGAACTGCTCAAATACAAATCTGAAGAAGGGGTGCGAGTTCTCTTGCTGATTTGGGATGATAAGACTTCCCATGACAAGTTGTTCTTCAAGTCGGCTGGAGTAATGCAGACACATGATGAAGAAACCAGGAAATTTTTTAAACATTCTTCTATTATGTGTGTTCTGGCACCTCGGTATGCTAGCAGCAAATTGAGTTACATGAAGCAACAAGTTGTTGGAACTATTTTCACACATCACCAAAAATGCGTCCTCGTGGACACACAGGCTTTTGGTAATAACCGTAAGATAACTGCTTTTCTAGGAGGGCTTGATCTATGTGATGGTCGCTATGACACACCTGAGCATCGACTATTTCGTGATCTTGATACTATATTTTCGGGTGATTTTCACAATCCTACATTTTCAGCTGGAACAAGGGCTCCTAGGCAACCATGGCATGATTTGCATTGCAGGATCGATGGGCCTGCCGCATATGATGTTCTTCTTAATTTTGAGCAGCGTTGGAGAAAAGCAACAAAGTGGAAAGAGTTTGGAATACTTTTCAAAAAGGCTTCCCATTGGCATGATGATGCTTTGCTGAAAATAGAACGCATCTCATGGATATTAAGTCCTTCCTTGCCTCGATCAAAGGATGGTAGCACAACTGTTCCAGGAGATAATCCTCTACTATGGGTCAACAGCGAAGATGATACTGATAACTGGCACGTTCAGATATTCCGCTCCATCGACTCAGGATCTCTGAAAGGGTTTCCCAAAAGGGTCGATATTGCTCAGTCCCAGAATCTTACCTGCGCTAAAAATTTAATAATAGATAAAAGCATTCAAACAGGATATATTCAAGCGATCAGATCTGCTCAACACTTTATCTATATTGAAAACCAATATTTTCTTGGATCATCTTATGCTTGGCCATCTTATAAGGATGCAGGAGCTGATAATCTCATCCCAATGGAACTGGCACTCAAAATTGCTAGTAAAATCAGAGCCAAGGAGAGATTTGCAGTGTATATTGTTTTACCAATGTGGCCAGAGGGTGACCCTAATTCAGCAGCAATGCAAGAAATCCTCTTTTGGCAGAGCCAGACAATGAAAATGATGTATGATGTTGTTGCAAGAGAATTGAAATCAATGCAACTTGTTGATTTGCATCCACAAGATTACCTCAACTTCTATTGCCTTGGAAACCGGGAAGAATTCCATGAAGAGAACTCCAGTTCAAACGGTGCTTTGGTCTCCGATTCACATAAGTATCACCGATTTATGATTTATGTGCATGCTAAGGGGATGATTGTTGATGATGAGTATGTTATGGTGGGATCTGCTAATATAAATCAAAGGTCTATGGCTGGCACAAAAGATACTGAGATAGTTATGGGTGCATATCAACCTCATCACACGTGGTTTGCTAGGAAAAGACATCCACGTGGTCAGATTTATGGTTACAGAATGTCACTGTGGGCGGAGCATCTTGGGTTGTTAGACTCAGATTTTGAAGAACCAGAGAGTTTGGAATGTGTGCGTAAGGTGAACTCCACTGCGGAAGAGAATTGGAGAAGATACGCGTCAGAAAACTTCTCATTATTGCAGGGACATATTTTGAAGTATCCTGTACAAGTAGATGCTGATGGGAAGGTCAGCCCTTTGCCGGAATATGAGGCTTTTGTGGACGTTGGCGGGAAAGTTATGGGATCTCATTTCCCTAGAATTCCTGATATTCTAACAACATAG 2550 0.4455 MSENGGETGIIYLHGDLDLTIFEARNLPNMDVFSQHFRRCVTACDTVKFHSVDDVKTRRRRRIITSDSYVTVSVPQSTVARTRVIKNMPNPQWNERFSIPLAHPVEHLEFRVKDDDVFGAQVVGTVNIPAHRIASGEFIAGWFPILGSSGKPTKPDTALRIEMKFVAVEENLLYRRGIAADPEHKGVMQTYFPLRKGSSVRLYQDAHVPNGILPEIKLEGGEVYKHGTCWEDICYAISEAHHMVYLVGWSIYHKVRIVREPSRPLPRGGDLTLGELLKYKSEEGVRVLLLIWDDKTSHDKLFFKSAGVMQTHDEETRKFFKHSSIMCVLAPRYASSKLSYMKQQVVGTIFTHHQKCVLVDTQAFGNNRKITAFLGGLDLCDGRYDTPEHRLFRDLDTIFSGDFHNPTFSAGTRAPRQPWHDLHCRIDGPAAYDVLLNFEQRWRKATKWKEFGILFKKASHWHDDALLKIERISWILSPSLPRSKDGSTTVPGDNPLLWVNSEDDTDNWHVQIFRSIDSGSLKGFPKRVDIAQSQNLTCAKNLIIDKSIQTGYIQAIRSAQHFIYIENQYFLGSSYAWPSYKDAGADNLIPMELALKIASKIRAKERFAVYIVLPMWPEGDPNSAAMQEILFWQSQTMKMMYDVVARELKSMQLVDLHPQDYLNFYCLGNREEFHEENSSSNGALVSDSHKYHRFMIYVHAKGMIVDDEYVMVGSANINQRSMAGTKDTEIVMGAYQPHHTWFARKRHPRGQIYGYRMSLWAEHLGLLDSDFEEPESLECVRKVNSTAEENWRRYASENFSLLQGHILKYPVQVDADGKVSPLPEYEAFVDVGGKVMGSHFPRIPDILTT 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5452g00042 849 PIRSF PLD_plant 2 849 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Pral5452g00042 849 Pfam PLD-like domain 553 731 IPR025202 -
Pral5452g00042 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 348 383 IPR001736 GO:0003824
Pral5452g00042 849 Pfam C2 domain 15 145 IPR000008 -
Pral5452g00042 849 PANTHER PHOSPHOLIPASE D 9 838 IPR015679 -
Pral5452g00042 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 150 IPR035892 -
Pral5452g00042 849 CDD C2_plant_PLD 11 166 - -
Pral5452g00042 849 Gene3D Endonuclease Chain A 516 739 - -
Pral5452g00042 849 FunFam Phospholipase D delta 220 464 - -
Pral5452g00042 849 Pfam Phospholipase D C terminal 768 838 IPR024632 -
Pral5452g00042 849 Gene3D C2 domain 14 174 IPR035892 -
Pral5452g00042 849 SUPERFAMILY Phospholipase D/nuclease 545 779 - -
Pral5452g00042 849 Pfam Phospholipase D Active site motif 349 383 IPR001736 GO:0003824
Pral5452g00042 849 SMART pld_4 694 721 IPR001736 GO:0003824
Pral5452g00042 849 SMART pld_4 348 383 IPR001736 GO:0003824
Pral5452g00042 849 Gene3D Endonuclease Chain A 220 464 - -
Pral5452g00042 849 ProSiteProfiles C2 domain profile. 1 143 IPR000008 -
Pral5452g00042 849 SUPERFAMILY Phospholipase D/nuclease 189 454 - -
Pral5452g00042 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 694 721 IPR001736 GO:0003824
Pral5452g00042 849 SMART C2_3c 16 142 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5452g00042 Pral-Chr5452 182628 188796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5452g00042 1 685 Phospholipase D Gene Family (Wang group) AT4G35790 68.580 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5452g00042 K01115 - gmx:100801787 1422.53