Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5452g00038 ATGGTATCCATTTCTTCAATTTTTTGGATACACAGTGCCGCCCATGGGATAATTGCTTTGGCTAGTAGCGCATCCCTTGGAACCAATAAATTTCTGAGCCAGGGTAGGGATGGAACTGTGAAACTATGGGATATTGGTGATGGTGGTTTGTCCAGGATTCCACATCTTACAATCAAGACAAACTCTTACCATTTTTGCAAGCTTTCCTTAGTGAAGAAGCCCATCACTTGGTCTAAATCTAAAGAAGAGAATGCGTCAAGAGATTGCCTCAGAATGGAGCTAAAGGGAAATTCTGATACTGAAAATCTGGAACTTAGAAGAGAAGAGACTCCGTCCAACCATGGTAGTTCTGAAAGCTCTGAAGGTAAAGCATGTCCTGAAGAATATGTGGCTTTATCGGGGGAGCAGCCTTCTGAGGTTGAAATTTGGGACCTCAAGTCTGCAAAGAAGTTCGCACAACTACCTTCAAACATTCCTAGTAGCTCCTCAAATGTCTGTGATAAAAACAGAGGGATGTGCATGGCGCTTCAATTATTTTTACCTTCTGAATCTCAAGGATTTCTGAATGTCTTGGCTGGATATGAAGATGGTTCCATGCTTTGGTGGGACGTACGGAATCCTGGAACTCCTGTAACCCCTGTGAAGTTCCATTCTGAACCAGTTCTTAGTGTTTGTATTGATGGGTTTTGCAAGGGAGGTATATCTGGAGCTGCAGATGACAAAATTGTAATGTATAGCTTGGAGCATTCTACGGGTACGTGTATGGTCAAGAGAGAAATCAACTTGGAGCGACCTGGAATATCAGGCACCTCAATCAGACCGGACGGAAAACTTGCTGCCACTGCTGGCTGGGACCATAGAGTGAGGATATATAATTATCGCAAAGGAAATGCTTTGGCAATATTGAAGTATCATCATGCCACGTGCAATGCTGTCACTTATTCATCTGATTCCAAAATCATGGCCTCTGCTTCAGAGGACGCAACAGTGGCACTATGGGAACTTTACCCTCCTCAAAATAGAAACTAA 1029 0.4325 MVSISSIFWIHSAAHGIIALASSASLGTNKFLSQGRDGTVKLWDIGDGGLSRIPHLTIKTNSYHFCKLSLVKKPITWSKSKEENASRDCLRMELKGNSDTENLELRREETPSNHGSSESSEGKACPEEYVALSGEQPSEVEIWDLKSAKKFAQLPSNIPSSSSNVCDKNRGMCMALQLFLPSESQGFLNVLAGYEDGSMLWWDVRNPGTPVTPVKFHSEPVLSVCIDGFCKGGISGAADDKIVMYSLEHSTGTCMVKREINLERPGISGTSIRPDGKLAATAGWDHRVRIYNYRKGNALAILKYHHATCNAVTYSSDSKIMASASEDATVALWELYPPQNRN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5452g00038 342 MobiDBLite consensus disorder prediction 100 124 - -
Pral5452g00038 342 Gene3D - 6 181 IPR015943 GO:0005515
Pral5452g00038 342 ProSitePatterns Trp-Asp (WD) repeats signature. 321 335 IPR019775 -
Pral5452g00038 342 Gene3D - 182 341 IPR015943 GO:0005515
Pral5452g00038 342 Pfam WD domain, G-beta repeat 299 333 IPR001680 GO:0005515
Pral5452g00038 342 Pfam WD domain, G-beta repeat 271 292 IPR001680 GO:0005515
Pral5452g00038 342 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 335 IPR001680 GO:0005515
Pral5452g00038 342 PANTHER TRANSDUCIN BETA-LIKE 3 14 335 - -
Pral5452g00038 342 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 342 - -
Pral5452g00038 342 SUPERFAMILY WD40 repeat-like 11 334 IPR036322 GO:0005515
Pral5452g00038 342 SMART WD40_4 207 246 IPR001680 GO:0005515
Pral5452g00038 342 SMART WD40_4 295 334 IPR001680 GO:0005515
Pral5452g00038 342 SMART WD40_4 253 292 IPR001680 GO:0005515
Pral5452g00038 342 SMART WD40_4 3 44 IPR001680 GO:0005515
Pral5452g00038 342 MobiDBLite consensus disorder prediction 100 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5452g00038 Pral-Chr5452 151784 157110 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5452g00038 190 340 U-box Gene Family AT2G33340 25.161 7.72e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5452g00038 K24770 - gmx:100800482 509.99