Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5452g00034 ATGTGTTCTGTCACGGCGGCGCCTTTTCAGTGTTTTAGTGGAAAGCAACTGAGAGGCCTTGTGATATTCCAAGGTGTGCGAGGACATTGGGGCTGTTTGAATAGGAGGATGAGATGTAATTATTTTCTCCCATCCAAATTGTCAAAAATGTGCAATCGATTAAAGCACAGGTTTGCAGAGAAGCTGCTGCTGGACATTGAAGGACCTGGTTCAAGAAGTAGCTCAAAGTTTCATAACAAGGTATCTGTTGTCATGGATTATGACCTTCCTGATGGAAATGAGAAAGGTGAAAAGAAATCTGAAATGAATCTTAAAGGTGAAGTAGATGAGGTGGACATCTCCATGGTATGTAAAAGATTTCCATCAATCATTTTGGGTCGTGCTTCTCAAGTGGCTTTGTATGATGGGACCACGTCTCTCCCTGAAATTACAAGCATTCTAGAAACAGTGGATTTAGAGCAGTATTTTTCTAATTCTTCTGAGGCAAGGTGGGTGCAAAATCCGGTCTCTGAAGCTCAGCCTTCTGCATATGCCAATCATTCGGGTGTAAAATCTTCTTCCGTAAGAAAAGAAGATTCTTATACTTGTCCTTTATCACCTCATTCAACATCTTCAATATATGAAGAAAAATTGGATCATCCAGTCACCAAGGAGAATTCTTGTGGGAAAGCGGGGTTGCAGTCCCACTTCAACCTTACACCCAATGAGTTATTTCTTGACAAGTCCATTAATTGTATACCTGGATTAAGTAAGAGAAATTGCCAGCAGCTAGAAAACTGTGGCTTTCACACGTTACGGAAATTGCTACACCATTTTCCACGAACATATGCTGATCTACAGAATGCACATTCTCAAATTACTGATGGGCAGTATTTGATTTTTGTTGGAAAAATCTTATCTTCAAGGGGAGTCAAAGCTAGTTTTTCCTTTTCATTTCTTGAGGTGGTTGTGGAATGTCAGGTTGTGGTTAGTGAATCAGCTATGCAACATGTGACAGGCAATATTACTGACAATGGGAAAGAGACAGTTTATTTGCATCTGAAGAAATTTTTCCGTGGCACTCGTTTTACCTGTAAGCCTTTTTTAAATAGTCTTGCTGAGAAGTATCAAAAAGGAGATTTAGCATGTGTGAGTGGCAAGGTGAGGACTATGCGTGCTAAAAATCATTATGAGATGAGAGATTATAATCTTGATGTGCTTGATGATGGCAACGATTCATCCTTCTGTGCTAAAGAAAGGCCATATCCAATCTACCCTTCCAAAGGAGGTTTGAACCCAGATTTTCTCAGGGATATCATTGCAAGAGGCTTACAGGCCTTGCCTGTCAATATTGATCCAATACCTCAAGAAATCACTCAGGAATTTGGTTTATTAAGTCTTCATGATGCATATACTGGGATTCACAAACCAAAGGATATCACTGAAGCTGATTTGGCTCGCAAGAGGCTTATATTTGATGAATTTTTTTACCTGCAGTTAGGCCGCTTATTCCAAATGCTTGAAGGTCTTGGTACAAAAATGGAAAAGGATGTATTGCTAGATAAGTATCGGAAAACAGAAGATAATGCTGGGTGTACAGAGACATGGTCATGTCTCACCAAAAAGTTTCTGGACGCACTTCCATATAGTCTTACAGCTGGTCAACTTCGTGCGGTTTCCGAAATTATTTGGGATCTGAAAAGGCCAGTCCCTATGAACCGACTACTGCAGGGTGATGTTGGGTGCGGAAAAACTGTGGTAGCTTTTCTGGCTTGCATGGAGGTTATTGGTTCTGGATATCAAGCGGCGTTCATGGTTCCAACAGAGCTGCTTGCGATCCAGCATTACCAGCACTTGCTTAATTTGCTAGAGAATTTGGCTGAGGTTGAGCGCAGACCCACAGTCGCTTTACTCACAGGTTCAACCCCACTAAAACAGTCTCGGCTGATTCGTAAGGGTATCCAGACTGGAGAAATCTCGATTGTCATAGGAACTCACAGTTTAATATCAGAAAATGTGGAATTTTCTGCTTTACGTATTGCTGTAGTAGACGAGCAGCACCGTTTCGGTGTGATTCAAAGAGGAAGGTTTAACAGTAAGTTATATTACACTTCATCAGTTTCTCATATGGAAGATGCCAGTTCAAATGGATCCCCAAAGAGTGATAGTGATGTATACATGGCTCCTCATGTTCTTGCTATGTCTGCTACTCCCATCCCAAGGACACTTGCTCTTGCTTTATATGGTGATATGTCACTGACAGAGATAACTGACTTGCCTCCTGGTAGAATTCCTGTTCAAACATACGCAATTGAAGGAAATGAAAATGGATATGAGTATGTCTACAAGATGATGATGGATGAGTTGGAAGACAGGGGGAAAGTATATCTTGTTTACCCAATTATCGAACTTTCTGAGCAGCTACCACAGCTTCGTGCAGCTTCTGCAGATCTAGAAGTCATATCACGTCGGTTTCAAGGATACAACTGTGGTTTATTACATGGGAAAATGAAAAGTGATGAAAAAGAGGAAGCATTGAGAAGGTTTAGGACTGGAGAAATGCATATCCTGCTTTCCACACAAGTAATTGAGATTGGTGTTGATGTTCCTGATGCATCTATGATGGTTGTCATGAATGCTGAGAGATTTGGGATTGCTCAGTTGCACCAACTTAGAGGACGAGTTGGACGTGGGGCAAGGAAATCTAAATGTATACTAATAGCATCTGCTGCTGGTAGCCTTAACCGATTGAAAGTACTTGAGCGCTCATCAGATGGCTTTTACCTTGCTAAAATGGACCTTTTATCACGGGGACCTGGTGACTTGCTTGGAAAGAAACAATCAGGACATCTTCCAGAGTTTCCTATCGCTAGATTGGAAGTTGATGGGAATATCTTACAAGATTCGCACCTTGCTGCACTGAAAATTCTAAGCACTTCCCATGATTTGGAGCAGTTCCCTGCGCTTAAACTGGAGCTTAGCATGAGACAGCCACTTTGCCTGCTCGGCGATTGA 2994 0.4155 MCSVTAAPFQCFSGKQLRGLVIFQGVRGHWGCLNRRMRCNYFLPSKLSKMCNRLKHRFAEKLLLDIEGPGSRSSSKFHNKVSVVMDYDLPDGNEKGEKKSEMNLKGEVDEVDISMVCKRFPSIILGRASQVALYDGTTSLPEITSILETVDLEQYFSNSSEARWVQNPVSEAQPSAYANHSGVKSSSVRKEDSYTCPLSPHSTSSIYEEKLDHPVTKENSCGKAGLQSHFNLTPNELFLDKSINCIPGLSKRNCQQLENCGFHTLRKLLHHFPRTYADLQNAHSQITDGQYLIFVGKILSSRGVKASFSFSFLEVVVECQVVVSESAMQHVTGNITDNGKETVYLHLKKFFRGTRFTCKPFLNSLAEKYQKGDLACVSGKVRTMRAKNHYEMRDYNLDVLDDGNDSSFCAKERPYPIYPSKGGLNPDFLRDIIARGLQALPVNIDPIPQEITQEFGLLSLHDAYTGIHKPKDITEADLARKRLIFDEFFYLQLGRLFQMLEGLGTKMEKDVLLDKYRKTEDNAGCTETWSCLTKKFLDALPYSLTAGQLRAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLAIQHYQHLLNLLENLAEVERRPTVALLTGSTPLKQSRLIRKGIQTGEISIVIGTHSLISENVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYTSSVSHMEDASSNGSPKSDSDVYMAPHVLAMSATPIPRTLALALYGDMSLTEITDLPPGRIPVQTYAIEGNENGYEYVYKMMMDELEDRGKVYLVYPIIELSEQLPQLRAASADLEVISRRFQGYNCGLLHGKMKSDEKEEALRRFRTGEMHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGARKSKCILIASAAGSLNRLKVLERSSDGFYLAKMDLLSRGPGDLLGKKQSGHLPEFPIARLEVDGNILQDSHLAALKILSTSHDLEQFPALKLELSMRQPLCLLGD 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5452g00034 997 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 774 928 IPR001650 -
Pral5452g00034 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 753 IPR027417 -
Pral5452g00034 997 Pfam Helicase conserved C-terminal domain 773 891 IPR001650 -
Pral5452g00034 997 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 37 992 IPR047112 GO:0006281
Pral5452g00034 997 Gene3D - 759 930 IPR027417 -
Pral5452g00034 997 Pfam DEAD/DEAH box helicase 566 734 IPR011545 GO:0003676|GO:0005524
Pral5452g00034 997 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 753 946 IPR027417 -
Pral5452g00034 997 NCBIfam ATP-dependent DNA helicase RecG 260 963 IPR004609 GO:0003678|GO:0006281|GO:0006310
Pral5452g00034 997 CDD DEXHc_RecG 483 753 - -
Pral5452g00034 997 Gene3D - 498 750 IPR027417 -
Pral5452g00034 997 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 917 975 IPR045562 -
Pral5452g00034 997 SUPERFAMILY Nucleic acid-binding proteins 238 440 IPR012340 -
Pral5452g00034 997 SMART ultradead3 540 760 IPR014001 -
Pral5452g00034 997 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 558 749 IPR014001 -
Pral5452g00034 997 SMART helicmild6 795 892 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5452g00034 Pral-Chr5452 135283 150858 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5452g00034 817 936 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 8.43e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5452g00034 K03655 - qsa:O6P43_032612 1403.65