Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5452g00033 ATGACATTGACAAGCTCGGCTGCACAATCATGTGTTCTGTTTTACTTTGTATTTGAACACATGTCCGAAGTCACGGCGGCGCCTTTTCAGTGTTTTAGTGGAAAGCAACTGAGAGGCCTTGTGATATTCCAAGGTGTGCGAGGACATTGGGGCTGTTTGAATAGGAGGATGAGATGTAATTATTTTCTCCCATCCAAATTGTCAAAAATGTGCAATCGATTAAAGCACAGGTTTGCAGAGAAGCTGCTGCTGGACATTGAAGGACCTGGTTCAAGAAGTAGCTCAAAGTTTCATAACAAGGTATCTGTTGTCATGGATTATGACCTTCCTGATGGAAATGAGAAAGGTGAAAAGAAATCTGAAATGAATCTTAAAGGTGAAGTAGATGAGGTGGACATCTCCATGGTATGTAAAAGATTTCCATCAATCATTTTGGGTCGTGCTTCTCAAGTGGCTTTGTATGATGGGACCACGTCTCTCCCTGAAATTACAAGCATTCTAGAAACAGTGGATTTAGAGCAGTATTTTTCTAATTCTTCTGAGGCAAGGTGGGTGCAAAATCCGGTCTCTGAAGCTCAGCCTTCTGCATATGCCAATCATTCGGGTGTAAAATCTTCTTCCGTAAGAAAAGAAGATTCTTATACTTGTCCTTTATCACCTCATTCAACATCTTCAATATATGAAGAAAAATTGGATCATCCAGTCACCAAGGAGAATTCTTGTGGGAAAGCGGGGTTGCAGTCCCACTTCAACCTTACACCCAATGAGTTATTTCTTGACAAGTCCATTAATTGTATACCTGGATTAAGTAAGAGAAATTGCCAGCAGCTAGAAAACTGTGGCTTTCACACGTTACGGAAATTGCTACACCATTTTCCACGAACATATGCTGATCTACAGAATGCACATTCTCAAATTACTGATGGGCAGTATTTGATTTTTGTTGGAAAAATCTTATCTTCAAGGGGAGTCAAAGCTAGTTTTTCCTTTTCATTTCTTGAGGTGGTTGTGGAATGTCAGGTTGTGGTTAGTGAATCAGCTATGCAACATGTGACAGGCAATATTACTGACAATGGGAAAGAGACAGTTTATTTGCATCTGAAGAAATTTTTCCGTGGCACTCGTTTTACCTGTAAGCCTTTTTTAAATAGTCTTGCTGAGAAGTATCAAAAAGGAGATTTAGCATGTGTGAGTGGCAAGGTGAGGACTATGCGTGCTAAAAATCATTATGAGATGAGAGATTATAATCTTGATGTGCTTGATGATGGCAACGATTCATCCTTCTGTGCTAAAGAAAGGCCATATCCAATCTACCCTTCCAAAGGAGGTTTGAACCCAGATTTTCTCAGGGATATCATTGCAAGAGGCTTACAGGCCTTGCCTGTCAATATTGATCCAATACCTCAAGAAATCACTCAGGAATTTGGTTTATTAAGTCTTCATGATGCATATACTGGGATTCACAAACCAAAGGATATCACTGAAGCTGATTTGGCTCGCAAGAGGCTTATATTTGATGAATTTTTTTACCTGCAGTTAGGCCGCTTATTCCAAATGCTTGAAGGTCTTGGTACAAAAATGGAAAAGGATGTATTGCTAGATAAGTATCGGAAAACAGAAGATAATGCTGGGTGTACAGAGACATGGTCATGTCTCACCAAAAAGTTTCTGGACGCACTTCCATATAGTCTTACAGCTGGTCAACTTCGTGCGGTTTCCGAAATTATTTGGGATCTGAAAAGGCCAGTCCCTATGAACCGACTACTGCAGGGTGATGTTGGGTGCGGAAAAACTGTGGTAGCTTTTCTGGCTTGCATGGAGGTTATTGGTTCTGGATATCAAGCGGCGTTCATGGTTCCAACAGAGCTGCTTGCGATCCAGCATTACCAGCACTTGCTTAATTTGCTAGAGAATTTGGCTGAGGTTGAGCGCAGACCCACAGTCGCTTTACTCACAGGTTCAACCCCACTAAAACAGTCTCGGCTGATTCGTAAGGGTATCCAGACTGGAGAAATCTCGATTGTCATAGGAACTCACAGTTTAATATCAGAAAATGTGGAATTTTCTGCTTTACGTATTGCTGTAGTAGACGAGCAGCACCGTTTCGGTGTGATTCAAAGAGGAAGGTTTAACAGTAAGTTATATTACACTTCATCAGTTTCTCATATGGAAGATGCCAGTTCAAATGGATCCCCAAAGAGTGATAGTGATGTATACATGGCTCCTCATGTTCTTGCTATGTCTGCTACTCCCATCCCAAGGACACTTGCTCTTGCTTTATATGGTGATATGTCACTGACAGAGATAACTGACTTGCCTCCTGGTAGAATTCCTGTTCAAACATACGCAATTGAAGGAAATGAAAATGGATATGAGTATGTCTACAAGATGATGATGGATGAGTTGGAAGACAGGGGGAAAGTATATCTTGTTTACCCAATTATCGAACTTTCTGAGCAGCTACCACAGCTTCGTGCAGCTTCTGCAGATCTAGAAGTCATATCACGTCGGTTTCAAGGATACAACTGTGGTTTATTACATGGGAAAATGAAAAGTGATGAAAAAGAGGAAGCATTGAGAAGGTTTAGGACTGGAGAAATGCATATCCTGCTTTCCACACAAGTAATTGAGATTGGTGTTGATGTTCCTGATGCATCTATGATGGTTGTCATGAATGCTGAGAGATTTGGGATTGCTCAGTTGCACCAACTTAGAGGACGAGTTGGACGTGGGGCAAGGAAATCTAAATGTATACTAATAGCATCTGCTGCTGGTAGCCTTAACCGATTGAAAGTACTTGAGCGCTCATCAGATGGCTTTTACCTTGCTAAAATGGACCTTTTATCACGGGGACCTGGTGACTTGCTTGGAAAGAAACAATCAGGACATCTTCCAGAGTTTCCTATCGCTAGATTGGAAGTTGATGGGAATATCTTACAAGATTCGCACCTTGCTGCACTGAAAATTCTAAGCACTTCCCATGATTTGGAGCAGTTCCCTGCGCTTAAACTGGAGCTTAGCATGAGACAGCCACTTTGCCTGCTCGGCGATTGA 3054 0.4152 MTLTSSAAQSCVLFYFVFEHMSEVTAAPFQCFSGKQLRGLVIFQGVRGHWGCLNRRMRCNYFLPSKLSKMCNRLKHRFAEKLLLDIEGPGSRSSSKFHNKVSVVMDYDLPDGNEKGEKKSEMNLKGEVDEVDISMVCKRFPSIILGRASQVALYDGTTSLPEITSILETVDLEQYFSNSSEARWVQNPVSEAQPSAYANHSGVKSSSVRKEDSYTCPLSPHSTSSIYEEKLDHPVTKENSCGKAGLQSHFNLTPNELFLDKSINCIPGLSKRNCQQLENCGFHTLRKLLHHFPRTYADLQNAHSQITDGQYLIFVGKILSSRGVKASFSFSFLEVVVECQVVVSESAMQHVTGNITDNGKETVYLHLKKFFRGTRFTCKPFLNSLAEKYQKGDLACVSGKVRTMRAKNHYEMRDYNLDVLDDGNDSSFCAKERPYPIYPSKGGLNPDFLRDIIARGLQALPVNIDPIPQEITQEFGLLSLHDAYTGIHKPKDITEADLARKRLIFDEFFYLQLGRLFQMLEGLGTKMEKDVLLDKYRKTEDNAGCTETWSCLTKKFLDALPYSLTAGQLRAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLAIQHYQHLLNLLENLAEVERRPTVALLTGSTPLKQSRLIRKGIQTGEISIVIGTHSLISENVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYTSSVSHMEDASSNGSPKSDSDVYMAPHVLAMSATPIPRTLALALYGDMSLTEITDLPPGRIPVQTYAIEGNENGYEYVYKMMMDELEDRGKVYLVYPIIELSEQLPQLRAASADLEVISRRFQGYNCGLLHGKMKSDEKEEALRRFRTGEMHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGARKSKCILIASAAGSLNRLKVLERSSDGFYLAKMDLLSRGPGDLLGKKQSGHLPEFPIARLEVDGNILQDSHLAALKILSTSHDLEQFPALKLELSMRQPLCLLGD 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5452g00033 1017 Gene3D - 779 950 IPR027417 -
Pral5452g00033 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 773 IPR027417 -
Pral5452g00033 1017 Pfam Helicase conserved C-terminal domain 793 911 IPR001650 -
Pral5452g00033 1017 SMART ultradead3 560 780 IPR014001 -
Pral5452g00033 1017 SMART helicmild6 815 912 IPR001650 -
Pral5452g00033 1017 Pfam DEAD/DEAH box helicase 586 754 IPR011545 GO:0003676|GO:0005524
Pral5452g00033 1017 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 937 995 IPR045562 -
Pral5452g00033 1017 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 794 948 IPR001650 -
Pral5452g00033 1017 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 46 1012 IPR047112 GO:0006281
Pral5452g00033 1017 SUPERFAMILY Nucleic acid-binding proteins 258 460 IPR012340 -
Pral5452g00033 1017 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 578 769 IPR014001 -
Pral5452g00033 1017 NCBIfam ATP-dependent DNA helicase RecG 280 983 IPR004609 GO:0003678|GO:0006281|GO:0006310
Pral5452g00033 1017 Gene3D - 518 770 IPR027417 -
Pral5452g00033 1017 CDD DEXHc_RecG 503 773 - -
Pral5452g00033 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 966 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5452g00033 Pral-Chr5452 135283 150859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5452g00033 837 956 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 8.20e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5452g00033 K03655 - qsa:O6P43_032612 1405.19