Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5452g00032 ATGACATTGACAAGCTCGGCTGCACAATCATGTGTTCTGTTTTACTTTGTATTTGAACACATGTCCGAAGTCACGGCGGCGCCTTTTCAGTGTTTTAGTGGAAAGCAACTGAGAGGCCTTGTGATATTCCAAGGTGTGCGAGGACATTGGGGCTGTTTGAATAGGAGGATGAGATGTAATTATTTTCTCCCATCCAAATTGTCAAAAATGTGCAATCGATTAAAGCACAGGTTTGCAGAGAAGCTGCTGCTGGACATTGAAGGACCTGGTTCAAGAAGTAGCTCAAAGTTTCATAACAAGGTATCTGTTGTCATGGATTATGACCTTCCTGATGGAAATGAGAAAGGTGAAAAGAAATCTGAAATGAATCTTAAAGGTGAAGTAGATGAGGTGGACATCTCCATGGTATGTAAAAGATTTCCATCAATCATTTTGGGTCGTGCTTCTCAAGTGGCTTTGTATGATGGGACCACGTCTCTCCCTGAAATTACAAGCATTCTAGAAACAGTGGATTTAGAGCAGTATTTTTCTAATTCTTCTGAGGCAAGGTGGGTGCAAAATCCGGTCTCTGAAGCTCAGCCTTCTGCATATGCCAATCATTCGGAAAAATTGGATCATCCAGTCACCAAGGAGAATTCTTGTGGGAAAGCGGGGTTGCAGTCCCACTTCAACCTTACACCCAATGAGTTATTTCTTGACAAGTCCATTAATTGTATACCTGGATTAAGTAAGAGAAATTGCCAGCAGCTAGAAAACTGTGGCTTTCACACGTTACGGAAATTGCTACACCATTTTCCACGAACATATGCTGATCTACAGAATGCACATTCTCAAATTACTGATGGGCAGTATTTGATTTTTGTTGGAAAAATCTTATCTTCAAGGGGAGTCAAAGCTAGTTTTTCCTTTTCATTTCTTGAGGTGGTTGTGGAATGTCAGGTTGTGGTTAGTGAATCAGCTATGCAACATGTGACAGGCAATATTACTGACAATGGGAAAGAGACAGTTTATTTGCATCTGAAGAAATTTTTCCGTGGCACTCGTTTTACCTGTAAGCCTTTTTTAAATAGTCTTGCTGAGAAGTATCAAAAAGGAGATTTAGCATGTGTGAGTGGCAAGGTGAGGACTATGCGTGCTAAAAATCATTATGAGATGAGAGATTATAATCTTGATGTGCTTGATGATGGCAACGATTCATCCTTCTGTGCTAAAGAAAGGCCATATCCAATCTACCCTTCCAAAGGAGGTTTGAACCCAGATTTTCTCAGGGATATCATTGCAAGAGGCTTACAGGCCTTGCCTGTCAATATTGATCCAATACCTCAAGAAATCACTCAGGAATTTGGTTTATTAAGTCTTCATGATGCATATACTGGGATTCACAAACCAAAGGATATCACTGAAGCTGATTTGGCTCGCAAGAGGCTTATATTTGATGAATTTTTTTACCTGCAGTTAGGCCGCTTATTCCAAATGCTTGAAGGTCTTGGTACAAAAATGGAAAAGGATGTATTGCTAGATAAGTATCGGAAAACAGAAGATAATGCTGGGTGTACAGAGACATGGTCATGTCTCACCAAAAAGTTTCTGGACGCACTTCCATATAGTCTTACAGCTGGTCAACTTCGTGCGGTTTCCGAAATTATTTGGGATCTGAAAAGGCCAGTCCCTATGAACCGACTACTGCAGGGTGATGTTGGGTGCGGAAAAACTGTGGTAGCTTTTCTGGCTTGCATGGAGGTTATTGGTTCTGGATATCAAGCGGCGTTCATGGTTCCAACAGAGCTGCTTGCGATCCAGCATTACCAGCACTTGCTTAATTTGCTAGAGAATTTGGCTGAGGTTGAGCGCAGACCCACAGTCGCTTTACTCACAGGTTCAACCCCACTAAAACAGTCTCGGCTGATTCGTAAGGGTATCCAGACTGGAGAAATCTCGATTGTCATAGGAACTCACAGTTTAATATCAGAAAATGTGGAATTTTCTGCTTTACGTATTGCTGTAGTAGACGAGCAGCACCGTTTCGGTGTGATTCAAAGAGGAAGGTTTAACAGTAAGTTATATTACACTTCATCAGTTTCTCATATGGAAGATGCCAGTTCAAATGGATCCCCAAAGAGTGATAGTGATGTATACATGGCTCCTCATGTTCTTGCTATGTCTGCTACTCCCATCCCAAGGACACTTGCTCTTGCTTTATATGGTGATATGTCACTGACAGAGATAACTGACTTGCCTCCTGGTAGAATTCCTGTTCAAACATACGCAATTGAAGGAAATGAAAATGGATATGAGTATGTCTACAAGATGATGATGGATGAGTTGGAAGACAGGGGGAAAGTATATCTTGTTTACCCAATTATCGAACTTTCTGAGCAGCTACCACAGCTTCGTGCAGCTTCTGCAGATCTAGAAGTCATATCACGTCGGTTTCAAGGATACAACTGTGGTTTATTACATGGGAAAATGAAAAGTGATGAAAAAGAGGAAGCATTGAGAAGGTTTAGGACTGGAGAAATGCATATCCTGCTTTCCACACAAGTAATTGAGATTGGTGTTGATGTTCCTGATGCATCTATGATGGTTGTCATGAATGCTGAGAGATTTGGGATTGCTCAGTTGCACCAACTTAGAGGACGAGTTGGACGTGGGGCAAGGAAATCTAAATGTATACTAATAGCATCTGCTGCTGGTAGCCTTAACCGATTGAAAGTACTTGAGCGCTCATCAGATGGCTTTTACCTTGCTAAAATGGACCTTTTATCACGGGGACCTGGTGACTTGCTTGGAAAGAAACAATCAGGACATCTTCCAGAGTTTCCTATCGCTAGATTGGAAGTTGATGGGAATATCTTACAAGATTCGCACCTTGCTGCACTGAAAATTCTAAGCACTTCCCATGATTTGGAGCAGTTCCCTGCGCTTAAACTGGAGCTTAGCATGAGACAGCCACTTTGCCTGCTCGGCGATTGA 2973 0.4181 MTLTSSAAQSCVLFYFVFEHMSEVTAAPFQCFSGKQLRGLVIFQGVRGHWGCLNRRMRCNYFLPSKLSKMCNRLKHRFAEKLLLDIEGPGSRSSSKFHNKVSVVMDYDLPDGNEKGEKKSEMNLKGEVDEVDISMVCKRFPSIILGRASQVALYDGTTSLPEITSILETVDLEQYFSNSSEARWVQNPVSEAQPSAYANHSEKLDHPVTKENSCGKAGLQSHFNLTPNELFLDKSINCIPGLSKRNCQQLENCGFHTLRKLLHHFPRTYADLQNAHSQITDGQYLIFVGKILSSRGVKASFSFSFLEVVVECQVVVSESAMQHVTGNITDNGKETVYLHLKKFFRGTRFTCKPFLNSLAEKYQKGDLACVSGKVRTMRAKNHYEMRDYNLDVLDDGNDSSFCAKERPYPIYPSKGGLNPDFLRDIIARGLQALPVNIDPIPQEITQEFGLLSLHDAYTGIHKPKDITEADLARKRLIFDEFFYLQLGRLFQMLEGLGTKMEKDVLLDKYRKTEDNAGCTETWSCLTKKFLDALPYSLTAGQLRAVSEIIWDLKRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLAIQHYQHLLNLLENLAEVERRPTVALLTGSTPLKQSRLIRKGIQTGEISIVIGTHSLISENVEFSALRIAVVDEQHRFGVIQRGRFNSKLYYTSSVSHMEDASSNGSPKSDSDVYMAPHVLAMSATPIPRTLALALYGDMSLTEITDLPPGRIPVQTYAIEGNENGYEYVYKMMMDELEDRGKVYLVYPIIELSEQLPQLRAASADLEVISRRFQGYNCGLLHGKMKSDEKEEALRRFRTGEMHILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGARKSKCILIASAAGSLNRLKVLERSSDGFYLAKMDLLSRGPGDLLGKKQSGHLPEFPIARLEVDGNILQDSHLAALKILSTSHDLEQFPALKLELSMRQPLCLLGD 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5452g00032 990 CDD DEXHc_RecG 476 746 - -
Pral5452g00032 990 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 551 742 IPR014001 -
Pral5452g00032 990 Pfam DEAD/DEAH box helicase 559 727 IPR011545 GO:0003676|GO:0005524
Pral5452g00032 990 Gene3D - 491 743 IPR027417 -
Pral5452g00032 990 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 767 921 IPR001650 -
Pral5452g00032 990 Gene3D - 752 923 IPR027417 -
Pral5452g00032 990 Pfam ATP-dependent DNA helicase RecG, domain 3, C-terminal 910 968 IPR045562 -
Pral5452g00032 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 746 939 IPR027417 -
Pral5452g00032 990 NCBIfam ATP-dependent DNA helicase RecG 253 956 IPR004609 GO:0003678|GO:0006281|GO:0006310
Pral5452g00032 990 SUPERFAMILY Nucleic acid-binding proteins 231 433 IPR012340 -
Pral5452g00032 990 PANTHER ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC 46 985 IPR047112 GO:0006281
Pral5452g00032 990 SMART ultradead3 533 753 IPR014001 -
Pral5452g00032 990 Pfam Helicase conserved C-terminal domain 766 884 IPR001650 -
Pral5452g00032 990 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 746 IPR027417 -
Pral5452g00032 990 SMART helicmild6 788 885 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5452g00032 Pral-Chr5452 135283 150859 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5452g00032 810 929 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 8.15e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5452g00032 K03655 - qsa:O6P43_032612 1368.6