Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5452g00031 ATGGCGGTTACACCTAGAAGCACTTCCAGCTTGGAATTGACCATATCTGTCCCTGGCTTTGCTTCTTCTGCTCCTCTTCCTTCATCTGCAGTGAGAGAGTTGGACATGAACCAACTACCGTCATCAGAAGAGGAATGGATAACAATGGAAGAAGAAGAAGAAAGCAGTAATGGGGGAGGAGGAGGTCCTCCTCGTAAGAAACTTCGTCTCACCAAGGAACAGTCTCGTCTTCTCGAGGACAGCTTCAGACAAAACCACACTCTGAACCCAAAGCAGAAGGAATCATTGGCAAAGCAGTTGAATCTGAGAGCCAGGCAGGTGGAGGTATGGTTCCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAGACGGAGATGGAGTGCGAGTACCTGAAGAGATGGTTCGGATCGCTGAGTGAACAGAACAGAAGGCTGCACAAGGAAGTGGAGCAGCTCAGGGCCATGAAGGTGGGGCCACCCACCGTGATGTCCCCCCACGGCCGCCACCCACTTCCCGCCTCCACCCTCACCATGTGCCCTCGCTGCGAGAAGGTCACCACCACCTCCTCCCCCGACAAGGGACCCACCCTGTCTTCTTCTTTCACTCACTAG 609 0.5419 MAVTPRSTSSLELTISVPGFASSAPLPSSAVRELDMNQLPSSEEEWITMEEEEESSNGGGGGPPRKKLRLTKEQSRLLEDSFRQNHTLNPKQKESLAKQLNLRARQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLSEQNRRLHKEVEQLRAMKVGPPTVMSPHGRHPLPASTLTMCPRCEKVTTTSSPDKGPTLSSSFTH 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5452g00031 202 Pfam Homeobox associated leucine zipper 121 155 IPR003106 GO:0006355|GO:0043565
Pral5452g00031 202 SMART halz 121 164 IPR003106 GO:0006355|GO:0043565
Pral5452g00031 202 CDD homeodomain 64 122 IPR001356 GO:0003677
Pral5452g00031 202 FunFam Homeobox-leucine zipper protein 18 48 126 - -
Pral5452g00031 202 ProSitePatterns 'Homeobox' domain signature. 96 119 IPR017970 GO:0000981|GO:0006355
Pral5452g00031 202 MobiDBLite consensus disorder prediction 1 68 - -
Pral5452g00031 202 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 28 191 - -
Pral5452g00031 202 Pfam Homeodomain 65 119 IPR001356 GO:0003677
Pral5452g00031 202 ProSiteProfiles 'Homeobox' domain profile. 61 121 IPR001356 GO:0003677
Pral5452g00031 202 MobiDBLite consensus disorder prediction 1 23 - -
Pral5452g00031 202 Gene3D - 38 123 - -
Pral5452g00031 202 MobiDBLite consensus disorder prediction 183 202 - -
Pral5452g00031 202 SUPERFAMILY Homeodomain-like 52 122 IPR009057 -
Pral5452g00031 202 SMART HOX_1 63 125 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5452g00031 Pral-Chr5452 126814 130278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5452g00031 31 191 Homeobox Transcription Factor Family AT1G70920 61.446 1.01e-59 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5452g00031 Homeodomain 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5452g00031 K09338 - cpap:110813413 283.878