Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5452g00026 ATGAGTCTAACAGGTCTGGTTTCGCTCGTGTTCGACTTTATTGGTCTTGTCCCGTACAAGATCAATCATCAGAAGCAGGCAATTGCAAGTGATTCGGCAGAAGCTCCAAGGTTGATCGAAGTTGACTGGTGCTGTGTGTGTTTGTCGAGGTTAAAGGAGAAAGATGAGACGAAGGTTCTTCCTTGCTTTCACAGATTCCATAAACTGTGTGTAGATAAATGGCTCAATAAGGGTCACCACAAAACATGTCCTCTGTGTCGTTTCTCAATGGTTGCAGCAGAAGATCAGAATAAGTCTCTCGCTTCTGCAGAATTCACTGAGGATATGCTTGACCCAGTCGTTCATATGGAATTTATTTCGCCCCCTAACTTGTGCTATTGGTGA 384 0.4401 MSLTGLVSLVFDFIGLVPYKINHQKQAIASDSAEAPRLIEVDWCCVCLSRLKEKDETKVLPCFHRFHKLCVDKWLNKGHHKTCPLCRFSMVAAEDQNKSLASAEFTEDMLDPVVHMEFISPPNLCYW 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5452g00026 127 SUPERFAMILY RING/U-box 38 92 - -
Pral5452g00026 127 PANTHER TARGET OF ERK KINASE MPK-1 34 92 - -
Pral5452g00026 127 ProSiteProfiles Zinc finger RING-type profile. 44 87 IPR001841 -
Pral5452g00026 127 SMART ring_2 44 86 IPR001841 -
Pral5452g00026 127 Pfam Ring finger domain 43 87 IPR001841 -
Pral5452g00026 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 104 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5452g00026 Pral-Chr5452 91425 92508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5452g00026 1 87 C3H Transcription Factor Family AT5G45290 39.080 7.86e-15 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5452g00026 - - pcin:129312163 233.032