Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5450g00055 ATGGGAAGATCACCGTGCTGCGATGAGATTGGTCTAAAGAAAGGCCCTTGGACTCCTGAAGAAGATCAGAAGCTTGTTAATTTCATTCAAGAGCATGGTCATAGGAGCTGGAGAGCTCTTCCAAAACTAGCAGGGCTGAACCGATGTGGGAAAAGTTGCAGGCTACGCTGGACGAATTACTTAAGGCCTGACATAAAGAGAGGGAAATTTTCTCAAGAAGAACAACAAACGATTCTGAATCTCCATGCCATCCTGGGAAACAAATGGTCAGCGATTGCGAGCCAGCTACCCGGACGGACAGATAATGAGATCAAGAATTTCTGGAACACCCATCTAAAGAAGAAGCTCATCCAAATGGGTTATGATCCGATGACACACCAACCTCGAACTGATCTTTTCTCAAGTTTGCCTCATCTCGTAGCTCTAGCTAATCTAAAAGGACTTCTGGACCATCAACCATGGCAACAGAGTGTTGCTTTGAGACTGCAAGAAGAGGCTGTTCAATTGGCCAGACTTCAAGGCTTACAACATCTCTTTCATCCTCAGCCTCAACCTTCTGCAACTGAAGCCAACTTAAACCGTGACTTCACGAACTTGGATGCCATTAATATTGACCTTCTGGAGTCCCTGAATCCGACGAACAATAACATTGCCTTAATTTCAACCCAGTCGGAAAACAATGTTATAAATAATCCGCCTCCAATTGGAGTCAACAACCTCCAGTTGGGATACGACTCGTTCTCTCACATGCCAGAGTTGAAATCACCACGTAACTCTCATCAACCACCATCGTCATTAAGTCAGGGAGAAAGTTCTCCCAATTCACCGTGGCTTCTTTCATGCTCAAGCAGTATTGCATCTCCTTCCACTGTGCCAGAGATTGCAATGACAAATACTGTTAATTATGGAGAAGGTGGTCCTTCCATGTGGCCCGACCTCCTGCTGGAGGACCCTTTGTTCCATGAAATTTCCTAG 975 0.4533 MGRSPCCDEIGLKKGPWTPEEDQKLVNFIQEHGHRSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEQQTILNLHAILGNKWSAIASQLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDLFSSLPHLVALANLKGLLDHQPWQQSVALRLQEEAVQLARLQGLQHLFHPQPQPSATEANLNRDFTNLDAINIDLLESLNPTNNNIALISTQSENNVINNPPPIGVNNLQLGYDSFSHMPELKSPRNSHQPPSSLSQGESSPNSPWLLSCSSSIASPSTVPEIAMTNTVNYGEGGPSMWPDLLLEDPLFHEIS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5450g00055 324 CDD SANT 69 112 IPR001005 -
Pral5450g00055 324 Gene3D - 69 116 - -
Pral5450g00055 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral5450g00055 324 Gene3D - 13 66 - -
Pral5450g00055 324 CDD SANT 16 61 IPR001005 -
Pral5450g00055 324 MobiDBLite consensus disorder prediction 247 279 - -
Pral5450g00055 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral5450g00055 324 FunFam Transcription factor MYB39 69 130 - -
Pral5450g00055 324 FunFam MYB-related transcription factor 13 66 - -
Pral5450g00055 324 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Pral5450g00055 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral5450g00055 324 SMART sant 66 114 IPR001005 -
Pral5450g00055 324 SMART sant 13 63 IPR001005 -
Pral5450g00055 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral5450g00055 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral5450g00055 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral5450g00055 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral5450g00055 324 MobiDBLite consensus disorder prediction 252 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5450g00055 Pral-Chr5450 225715 227224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5450g00055 1 323 MYB Transcription Factor Family AT5G10280 49.448 3.04e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral5450g00055 Myb_DNA-binding 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5450g00055 K09422 - qsu:112033310 387.882