Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5450g00047 ATGGCCATCTCACCTTTTGGAAGCACATCTGTTGCGCAATGGGGAATCCGTCCTCAGTTATTTATGAGATCCTGTATGACAGGTGGGATCACATCATCTGGCTTCAGTGTTACAAGTAGGGTAAGCTTTATGGCTGCCCCAAGTTCAAGCTTTTTTGGTCGTGATTCCTTGCATGCGCTATATGACCTGGGTTCTTCTCAAAGTTTTTTTCGTCGCAAGGGATCAAGGTTTATAGTTAGAGCAGATGTAGATTACTATTCTGTCCTTGGGGTGTCAAGAAATGCTAGTAAATCTGAAATTAAGAGTGCTTATCGGAAGCTTGCCAGGAGTTATCACCCAGATGTGAACAAAGAACCAGGCGCAGAACAGAAGTTTAAGGAAATTAGCAATGCATATGAGGTTTTATCAGATGATGAGAAACGATCCATATATGACAGATATGGAGAGGCTGGGCTTAAAGGTTCTGGAATAGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGACTCTGTTTGAGGGTATGAATCGTGGCATGAACACCAGAGGTTCCTGGAATGGAGCTCTTGATGGTGAAGATGAGTATTATAGTCTTGTCTTGAACTTTAAGGAAGCAGTTTTTGGAGTAGAAAAGGAGATAGAGATCAGCCGGCTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCGGGAACCAAGCCGACCAGATGTACCACTTGTGGGGGTCAAGGTAGGGTTGTCTCATCAACAAGGACACCATTGGGCATTTTCCAGCAGTCAATGACATGCTCTTCATGCAATGGGACTGGAGAAATTTCAACACCATGCAATACGTGTTCTGGGGATGGTCGAGTGCGGAGGACAAAACGAATAAGTCTGAAAGTCCCAGCTGGTGTAGACTCTGCTAGTCGTTTAAGGGTCCGAAATGAAGGAAATGCTGGAAGGCGAGGTGGTTCTCCTGGTGATCTCTTTGTTGTTATTGAAGTTATGCCAGATCCAGTCCTTAAACGTGATGACACCAACATTTTATACACTTGCAAGGTGTCATACATAGACGCAATCTTGGGAACTACAATCAAGGTTCCTACTGTTGATGGCATGGTGGATTTAAAAATCCCCGCTGGGACCCAACCGAACACCACACTTGTTATGGCTAAAAAAGGTGTTCCCCTGCTGAACAAGAGCAGTATGAGGGGTGATCAGTTCGTTCGGGTGCAAGTTGAAATCCCCAAAAAGCTGAGCAGCGATGAGAGAAAGCTTATTGAAGAACTTGCTGATCTAAGCAAAGGCAAGACTGCGACTAGCAAGAGATAA 1320 0.4485 MAISPFGSTSVAQWGIRPQLFMRSCMTGGITSSGFSVTSRVSFMAAPSSSFFGRDSLHALYDLGSSQSFFRRKGSRFIVRADVDYYSVLGVSRNASKSEIKSAYRKLARSYHPDVNKEPGAEQKFKEISNAYEVLSDDEKRSIYDRYGEAGLKGSGIGMGDFSNPFDLFETLFEGMNRGMNTRGSWNGALDGEDEYYSLVLNFKEAVFGVEKEIEISRLESCGTCNGSGAKPGTKPTRCTTCGGQGRVVSSTRTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGRVRRTKRISLKVPAGVDSASRLRVRNEGNAGRRGGSPGDLFVVIEVMPDPVLKRDDTNILYTCKVSYIDAILGTTIKVPTVDGMVDLKIPAGTQPNTTLVMAKKGVPLLNKSSMRGDQFVRVQVEIPKKLSSDERKLIEELADLSKGKTATSKR 439
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pral5450g00047 439 PRINTS DnaJ domain signature 104 119 IPR001623 -
Pral5450g00047 439 PRINTS DnaJ domain signature 120 140 IPR001623 -
Pral5450g00047 439 PRINTS DnaJ domain signature 140 159 IPR001623 -
Pral5450g00047 439 PRINTS DnaJ domain signature 86 104 IPR001623 -
Pral5450g00047 439 CDD DnaJ 84 137 IPR001623 -
Pral5450g00047 439 CDD DnaJ_zf 222 285 IPR001305 GO:0031072|GO:0051082
Pral5450g00047 439 FunFam Chaperone protein dnaJ 1, mitochondrial 332 439 - -
Pral5450g00047 439 Gene3D DnaJ domain 81 185 IPR036869 -
Pral5450g00047 439 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Pral5450g00047 439 CDD DnaJ_C 193 415 - -
Pral5450g00047 439 Gene3D - 332 439 - -
Pral5450g00047 439 FunFam Chaperone protein dnaJ A6 chloroplastic 81 185 - -
Pral5450g00047 439 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 209 288 IPR036410 -
Pral5450g00047 439 Pfam DnaJ central domain 222 285 IPR001305 GO:0031072|GO:0051082
Pral5450g00047 439 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 344 IPR008971 GO:0006457|GO:0051082
Pral5450g00047 439 NCBIfam molecular chaperone DnaJ 84 428 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pral5450g00047 439 Gene3D - 222 285 - -
Pral5450g00047 439 ProSiteProfiles dnaJ domain profile. 84 148 IPR001623 -
Pral5450g00047 439 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 48 437 - -
Pral5450g00047 439 Pfam DnaJ C terminal domain 197 412 IPR002939 -
Pral5450g00047 439 Pfam DnaJ domain 84 145 IPR001623 -
Pral5450g00047 439 Gene3D - 192 327 - -
Pral5450g00047 439 Hamap Chaperone protein DnaJ [dnaJ]. 81 435 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Pral5450g00047 439 FunFam Putative Mitochondrial DnaJ chaperone 277 327 - -
Pral5450g00047 439 FunFam Molecular chaperone DnaJ 214 290 - -
Pral5450g00047 439 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Pral5450g00047 439 SMART dnaj_3 83 140 IPR001623 -
Pral5450g00047 439 ProSiteProfiles Zinc finger CR-type profile. 209 290 IPR001305 GO:0031072|GO:0051082
Pral5450g00047 439 SUPERFAMILY Chaperone J-domain 81 179 IPR036869 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pral5450g00047 Pral-Chr5450 197435 202995 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5450g00047 85 147 C2H2 Transcription Factor Family AT1G74250 43.478 2.29e-09 57.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5450g00047 K03686 - gmx:100811006 764.607