Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5450g00032 ATGAAGAGACTTGGCAGCTCAGATTCTTTGGGCGCTCTCCTGCCCATCTGTCCATCCACAGAAGAACACAGTCCGAGGAACAACAATCGCGCTTACAGTAGGGACTTCCAATCCATGTTCGAGGGGCTAGACGGAGAAGGATGTGTGGAAGAATTGGGCCACCCGACGGAGAAGAAACGCCGTCTGACCGTGGATCAAGTGAAGGCTTTAGAGAAGAACTTCGAAGTAGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAACTCGGATTGCAGCCCAGGCAAGTGGCTGTGTGGTTCCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAGAGAGACTATGGCGTCCTCAAAGCCAATTATGATGCTCTCAAAATTAACTACGATGCCCTCCAACAAGACAATGAAGCCTTGCTGAAAGAGATTAAAGAACTGAAATCTAGATTGCAAGATCAAGAGAAGAGTGAAGACGTGTCATTGAAAGGAGAGATGAAGCAGCCTAAGTCGGAGGAGAAAGCGATGGGAGTGGGAGTGGGTGCGGGTGCGGAGCCTCCTGAAACGGCCATTCCTGGGGTGGAGTCCGAAGACCTAAATTACGAGTGCTTCATCAGAAACGGCGTCGTAGGAGGTTGCTCACTCTTCCTGGCAGACTTTAACAAAGACGGCGCTTCGGACAGCGACTCGAGCGCAATCCTGAACGAAGATCCAAGCTCTCGTTCCTTGAAATTCAACTGTTCTTCATCGTCGTTTCAGTTCCAGAAGACGTGCCAGACTCAGACTCACTACGTGAAGATGGAAGAGCACAACTTCTTCAGCACAGACGAGGCCTGCAACTTCTTCTCCGACGAACAGGCCCCCACCCTCCAGTGGTGCTGGAGTTAA 897 0.505 MKRLGSSDSLGALLPICPSTEEHSPRNNNRAYSRDFQSMFEGLDGEGCVEELGHPTEKKRRLTVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKINYDALQQDNEALLKEIKELKSRLQDQEKSEDVSLKGEMKQPKSEEKAMGVGVGAGAEPPETAIPGVESEDLNYECFIRNGVVGGCSLFLADFNKDGASDSDSSAILNEDPSSRSLKFNCSSSSFQFQKTCQTQTHYVKMEEHNFFSTDEACNFFSDEQAPTLQWCWS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5450g00032 298 PRINTS Lambda-repressor HTH signature 84 93 IPR000047 GO:0003677
Pral5450g00032 298 PRINTS Lambda-repressor HTH signature 93 109 IPR000047 GO:0003677
Pral5450g00032 298 FunFam Homeobox-leucine zipper protein HAT5 51 115 - -
Pral5450g00032 298 SUPERFAMILY Homeodomain-like 39 115 IPR009057 -
Pral5450g00032 298 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Pral5450g00032 298 Coils Coil 119 160 - -
Pral5450g00032 298 MobiDBLite consensus disorder prediction 155 175 - -
Pral5450g00032 298 Gene3D - 53 120 - -
Pral5450g00032 298 CDD homeodomain 58 114 IPR001356 GO:0003677
Pral5450g00032 298 SMART HOX_1 56 117 IPR001356 GO:0003677
Pral5450g00032 298 Pfam Homeobox associated leucine zipper 113 155 IPR003106 GO:0006355|GO:0043565
Pral5450g00032 298 Pfam Homeodomain 58 111 IPR001356 GO:0003677
Pral5450g00032 298 MobiDBLite consensus disorder prediction 155 195 - -
Pral5450g00032 298 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 297 IPR045224 GO:0003700
Pral5450g00032 298 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Pral5450g00032 298 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5450g00032 Pral-Chr5450 129199 131355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5450g00032 1 295 Homeobox Transcription Factor Family AT4G40060 46.519 1.21e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5450g00032 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5450g00032 K09338 - qsa:O6P43_030496 391.734