Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5450g00031 ATGAAGAGACTTGGCAGCTCAGATTCTTTGGGCGCTCTCCTGCCCATCTGTCCATCCACAGAACACAGTCCGAGGAACAACAATCGCGCTTACAGTAGGGACTTCCAATCCATGTTCGAGGGGCTAGACGGAGAAGGATGTGTGGAAGAATTGGGCCACCCGACGGAGAAGAAACGCCGTCTGACCGTGGATCAAGTGAAGGCTTTAGAGAAGAACTTCGAAGTAGAAAACAAGCTTGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAACTCGGATTGCAGCCCAGGCAAGTGGCTGTGTGGTTCCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAGAGAGACTATGGCGTCCTCAAAGCCAATTATGATGCTCTCAAAATTAACTACGATGCCCTCCAACAAGACAATGAAGCCTTGCTGAAAGAGATTAAAGAACTGAAATCTAGATTGCAAGATCAAGAGAAGAGTGAAGACGTGTCATTGAAAGGAGAGATGAAGCAGCCTAAGTCGGAGGAGAAAGCGATGGGAGTGGGAGTGGGTGCGGGTGCGGAGCCTCCTGAAACGGCCATTCCTGGGGTGGAGTCCGAAGACCTAAATTACGAGTGCTTCATCAGAAACGGCGTCGTAGGAGGTTGCTCACTCTTCCTGGCAGACTTTAACAAAGACGGCGCTTCGGACAGCGACTCGAGCGCAATCCTGAACGAAGATCCAAGCTCTCGTTCCTTGAAATTCAACTGTTCTTCATCGTCGTTTCAGTTCCAGAAGACGTGCCAGACTCAGACTCACTACGTGAAGATGGAAGAGCACAACTTCTTCAGCACAGACGAGGCCTGCAACTTCTTCTCCGACGAACAGGCCCCCACCCTCCAGTGGTGCTGGAGTTAA 894 0.5056 MKRLGSSDSLGALLPICPSTEHSPRNNNRAYSRDFQSMFEGLDGEGCVEELGHPTEKKRRLTVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKINYDALQQDNEALLKEIKELKSRLQDQEKSEDVSLKGEMKQPKSEEKAMGVGVGAGAEPPETAIPGVESEDLNYECFIRNGVVGGCSLFLADFNKDGASDSDSSAILNEDPSSRSLKFNCSSSSFQFQKTCQTQTHYVKMEEHNFFSTDEACNFFSDEQAPTLQWCWS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5450g00031 297 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Pral5450g00031 297 Coils Coil 118 159 - -
Pral5450g00031 297 Gene3D - 52 119 - -
Pral5450g00031 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 49 296 IPR045224 GO:0003700
Pral5450g00031 297 MobiDBLite consensus disorder prediction 154 174 - -
Pral5450g00031 297 SUPERFAMILY Homeodomain-like 38 114 IPR009057 -
Pral5450g00031 297 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Pral5450g00031 297 SMART HOX_1 55 116 IPR001356 GO:0003677
Pral5450g00031 297 CDD homeodomain 57 113 IPR001356 GO:0003677
Pral5450g00031 297 Pfam Homeobox associated leucine zipper 112 154 IPR003106 GO:0006355|GO:0043565
Pral5450g00031 297 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Pral5450g00031 297 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Pral5450g00031 297 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Pral5450g00031 297 MobiDBLite consensus disorder prediction 154 194 - -
Pral5450g00031 297 FunFam Homeobox-leucine zipper protein HAT5 50 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5450g00031 Pral-Chr5450 129197 131355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5450g00031 1 294 Homeobox Transcription Factor Family AT2G22430 47.500 1.31e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral5450g00031 Homeodomain 1.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5450g00031 K09338 - qsa:O6P43_030496 386.341