Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5450g00024 ATGCTCCTCCAGAATCTGCCTTCCCCGCAAGTTCAAGAAAGAATCACAATGGGGCTGTCCAACTTCCCCAGTGCAGCAGAGGGGCTGCTTCCGGTGCTGGTCATGAACACTTTGGTATCGGTGGCCACGTTGAAGAACCTGTTCAGGTATCTTCTCCGAGCGGTCGCTTGGAACTCAGAAGACATGAATGTGCAGGAAGAGCTTGGTGATGAAGATGATGAGCAGAGCTGTGTTGCGAGAAGGAGGGTGTCCATTATGCAGTACAAGTGCATGGTGAGTGATGGCGGAAGAAGGTCGGCCATGGCGGAGTGCTGCGTCTGTCTGTGTCGTTTCCAAGGCAGTGAAGAGGTGAGTGAGTTGTCTTGCAAGCATTTCTTCCACACGGCTTGCTTGGACAAGTGGTTCCTCAAGAGGCACGACACCTGCCCTCTCTGTCGTTCCACTTGCTAG 450 0.5333 MLLQNLPSPQVQERITMGLSNFPSAAEGLLPVLVMNTLVSVATLKNLFRYLLRAVAWNSEDMNVQEELGDEDDEQSCVARRRVSIMQYKCMVSDGGRRSAMAECCVCLCRFQGSEEVSELSCKHFFHTACLDKWFLKRHDTCPLCRSTC 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5450g00024 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 149 IPR013083 -
Pral5450g00024 149 Pfam Ring finger domain 103 146 IPR001841 -
Pral5450g00024 149 SUPERFAMILY RING/U-box 103 148 - -
Pral5450g00024 149 PANTHER - 17 148 IPR044249 -
Pral5450g00024 149 SMART ring_2 104 145 IPR001841 -
Pral5450g00024 149 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5450g00024 Pral-Chr5450 85800 86620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5450g00024 17 147 C3H Transcription Factor Family AT2G04240 30.405 3.86e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5450g00024 K16285 - gmx:100811790 155.221