Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5450g00002 ATGGAGAACGTTGGTGGAGGTTCGTCTTCAAATAACGACAACAGCGGAATCAAGGAGCAAGACAGGTTGTTGCCGATAGCGAATGTTGGTCGGATCATGAAGCAGATACTGCCTCAGAACGCCAAGATATCCAAGGAAGCAAAGGAGACCATGCAAGAATGCGTGTCGGAATTCATAAGCTTCGTGACAAGCGAGGCGTCGGAGAAGTGCCGGAAGGAGAGGAGGAAGACGGTGAATGGGGATGACATATGCTGGGCCTTGGGCACGCTTGGTTTTGATGACTACGCTGAGCCACTGAGGAGGTATCTGCACAGATTTAGAGAGTTAGAGGCTGACAGAGCTAATCATGAGAGGGGAAATAGCCCTCACGACAGGGATGACCTCTTTCACACTCCCTCCACAGGAATCAGGCAATGA 417 0.5084 MENVGGGSSSNNDNSGIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGTLGFDDYAEPLRRYLHRFRELEADRANHERGNSPHDRDDLFHTPSTGIRQ 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5450g00002 138 Gene3D Histone, subunit A 10 130 IPR009072 GO:0046982
Pral5450g00002 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Pral5450g00002 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral5450g00002 138 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pral5450g00002 138 FunFam Nuclear transcription factor Y subunit B-3 12 134 - -
Pral5450g00002 138 MobiDBLite consensus disorder prediction 113 132 - -
Pral5450g00002 138 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Pral5450g00002 138 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Pral5450g00002 138 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Pral5450g00002 138 MobiDBLite consensus disorder prediction 113 138 - -
Pral5450g00002 138 SUPERFAMILY Histone-fold 20 123 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5450g00002 Pral-Chr5450 8768 9377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5450g00002 17 127 CCAAT-HAP3 Transcription Factor Family AT2G47810 72.973 3.71e-59 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral5450g00002 CBFD_NFYB_HMF 6.5e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5450g00002 K08065 - gmx:100794513 209.149