Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5444g00027 ATGATGAAGATGGGTAGGAATCATATAATTCTTCGCCGTCGTGTTGAGTCTTGCAAATCCAGGTATTCAACTCTCGATGAAATCGTGAGCCATCTTCGCTCAAATTACCCCGATTATCGGCGAACAAAGCAGCAAATTTTGACTCGATCTGTTCAAGAAGCTTTGGAGTCATTTAAGCATGGGAGCAAGCAATTGAACAAAAAGCCTAGTGCTTCCGTATTTAAGTTTGACACCTCAGAAGATGACAAGGACGATGAAGAAGAGGGTTGGAGTGCATCTCGAAAGAGGCGCAAGAAAATTGATGAGAGTGAAGAGAATTTGCAAAAAATGGAGAATTTACACCTTAAAAAGTTGCAGAGGGATCAGGGTCATACATCGACCTCTTCTGCTTCAACTTCTAGTCCATCATTGTCATCAGAATCTAAAGAGAGTGATGGTGAAGACGGGGCTCTGTCCACATCAGAGGATGCAATTTATGGTGAGAAAGTGGAGCCAGCTGTTGACTTGATGAAGACAATGTTGCGGGCTTCATATTCAGAATCAAAGAAAGTAAAATCTAAAATGGAAGAGAAAAATGTAGAATTCGAGGTGGCCAATAATAGTAAAGCAACTAAAATTGATGCTATGGATGGGACTGGAGGTGGGATGAGATCGGATTTGGAATCCAAAAGGCAATTGAAGGATTCGTTTTCAAATGGCAGTGGTGATCTTGAGGTTAAGGGGAAGGGTGGACCTAGATTCAAAGATTTGGGTGGGATGAAGAAGGTACTGGAGGAGTTGAAAATGGAAGTTATTGTGCCACTTTATCATCCACAGTTGCCAAGAAGGTTAGGTGTGAGGCCAATAGCTGGGATTTTGTTGCATGGACCACCAGGATGTGGGAAGACTACACTGGCTCATGCTATAGCTAATGAGACTGGTTTTCCGTTCTATCAGATATCGGCTACAGAGTTAGTTTCTGGAGTTTCAGGAGCATCAGAAGAAAATATTAGAGAGCTTTTCTCTAAAGCATATAGGACCGCCCCATCAATTGTCTTTATTGATGAGATTGATGCAATTGCTTCAAAAAGAGAGAATTTACAGCGTGAGATGGAGAAACGAATTGTGACCCAATTAATGACTTCGATGGATCAATCAAACAGGCTTCTTCAACCAGCTGATAGTTCAGAAAGTTCTGATGCCCATCCTGGCTATATTCTTGTTATTGGAGCTACAAATAGGCCTGATGCTGTTGACCCTGCCCTAAGAAGGCCTGGGCGGTTTGATCGTGAAATTGTCCTTGGTGTTCCTGATGAACATGGGAGGGAGGAGATCTTGTTTGTGCTTACTCGCAATCTAAAACTAGAGGGCTCCTTTGATCTTAGGAAAATAGCCAGGTCTACACCAGGTTTTGTTGGAGCAGATTTAGCAGCTCTGGTTAACAAGGCAGGTAACCTGGCAATGAGAAGAATTATTGTTGAAAGGAAATGTGAGTTATCCCAAGATCCTTTAGATGAGCGTTCTGAAGAATGGTGGAGGGAACCTTGGTCACCTGAAGAGATGGATAAGCTTCTGATCGAAATGTCTGATTTTGAGGAAGCAGTTAAGTTGGTGCAACCTTCATCAAGAAGAGAAGGATTTTCTTCCATTCCTAATGTAAAATGGGAAGATATTGGTGGGCTTGATCTTCTAAGACGAGAGTTTGAGCGTTATATAGTTAGACGCATAAAATATCCAGAGGATTATGAGGAATTTGGGGTGAATCTTGAGACCGGATTTTTGCTTTATGGACCACCTGGGTGTGGTAAAACGCTGATAGCCAAAGCTGTTGCCCATGAAGCAGGAGCTAATTTTATTCATATCAAGGGCCCTGAACTCTTAAATAAATACGTTGGAGAAAGTGAGCTGGCAGTACGGACATTATTTAGTCGTGCAAGAACATGTTCGCCTTGCATTCTTTTCTTTGATGAGGTGGATGCTTTGACGACTAAACGGGGTAAAGAAGGTGGATGGGTTGTTGAACGGCTATTAAACCAGTTGCTTATTGAATTAGACGGTGCAGAGCAAAGGCAAGGTGTTTTTGTTATTGGTGCTACAAATAGACCTGAGGTGATGGACCGTGCTCTCCTTCGGCCCGGTCGGCTTGGCAAACTTCTCTATGTTCCTCTTCCAAGCCCTGATGAGCGAGGTCTGATCTTAAAAGCTCTTGCAAGGAAGAAGCCAATTGATGAAACTGTGGATTTGTGTGCCATTGGAAGAATGGAAGCTTGTGAAAACCTCAGCGGTGCTGATCTTGCTGCAGTGATGAACGAAGCAGCAGTGGCTGCAGCTGAAGAGAAATGGACAACAGAGAGCACTTGCAACGCATCGACCATCAAGTTCAGCCATTTTGAGATGGCATTGAGAAAAATCTCTCCATCAGTGTCAGACATGCAGCAAAAGCTATACTATCAACGATTGTCAGAGAGTTTTAAAGCTGCATGA 2463 0.43 MMKMGRNHIILRRRVESCKSRYSTLDEIVSHLRSNYPDYRRTKQQILTRSVQEALESFKHGSKQLNKKPSASVFKFDTSEDDKDDEEEGWSASRKRRKKIDESEENLQKMENLHLKKLQRDQGHTSTSSASTSSPSLSSESKESDGEDGALSTSEDAIYGEKVEPAVDLMKTMLRASYSESKKVKSKMEEKNVEFEVANNSKATKIDAMDGTGGGMRSDLESKRQLKDSFSNGSGDLEVKGKGGPRFKDLGGMKKVLEELKMEVIVPLYHPQLPRRLGVRPIAGILLHGPPGCGKTTLAHAIANETGFPFYQISATELVSGVSGASEENIRELFSKAYRTAPSIVFIDEIDAIASKRENLQREMEKRIVTQLMTSMDQSNRLLQPADSSESSDAHPGYILVIGATNRPDAVDPALRRPGRFDREIVLGVPDEHGREEILFVLTRNLKLEGSFDLRKIARSTPGFVGADLAALVNKAGNLAMRRIIVERKCELSQDPLDERSEEWWREPWSPEEMDKLLIEMSDFEEAVKLVQPSSRREGFSSIPNVKWEDIGGLDLLRREFERYIVRRIKYPEDYEEFGVNLETGFLLYGPPGCGKTLIAKAVAHEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGAEQRQGVFVIGATNRPEVMDRALLRPGRLGKLLYVPLPSPDERGLILKALARKKPIDETVDLCAIGRMEACENLSGADLAAVMNEAAVAAAEEKWTTESTCNASTIKFSHFEMALRKISPSVSDMQQKLYYQRLSESFKAA 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5444g00027 820 Pfam ATPase family associated with various cellular activities (AAA) 285 427 IPR003959 GO:0005524|GO:0016887
Pral5444g00027 820 Pfam ATPase family associated with various cellular activities (AAA) 587 715 IPR003959 GO:0005524|GO:0016887
Pral5444g00027 820 SMART AAA_5 582 718 IPR003593 GO:0016887
Pral5444g00027 820 SMART AAA_5 281 431 IPR003593 GO:0016887
Pral5444g00027 820 MobiDBLite consensus disorder prediction 118 159 - -
Pral5444g00027 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 544 800 IPR027417 -
Pral5444g00027 820 MobiDBLite consensus disorder prediction 88 106 - -
Pral5444g00027 820 FunFam Ribosome biogenesis ATPase RIX7 236 428 - -
Pral5444g00027 820 MobiDBLite consensus disorder prediction 62 106 - -
Pral5444g00027 820 Gene3D - 544 809 IPR027417 -
Pral5444g00027 820 FunFam Cell division control protein 48 homolog C 430 538 - -
Pral5444g00027 820 Pfam Nucleolin binding domain 11 60 IPR031996 -
Pral5444g00027 820 Gene3D - 717 795 - -
Pral5444g00027 820 ProSitePatterns AAA-protein family signature. 686 704 IPR003960 GO:0005524|GO:0016887
Pral5444g00027 820 FunFam ATPase, AAA family protein 544 722 - -
Pral5444g00027 820 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 536 IPR027417 -
Pral5444g00027 820 Gene3D - 239 428 IPR027417 -
Pral5444g00027 820 Gene3D - 430 538 - -
Pral5444g00027 820 PANTHER AAA-FAMILY ATPASE 107 818 - -
Pral5444g00027 820 ProSitePatterns AAA-protein family signature. 399 417 IPR003960 GO:0005524|GO:0016887
Pral5444g00027 820 Pfam AAA+ lid domain 452 491 IPR041569 -
Pral5444g00027 820 Coils Coil 93 120 - -
Pral5444g00027 820 MobiDBLite consensus disorder prediction 122 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5444g00027 Pral-Chr5444 234117 240605 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5444g00027 244 818 Calmodulin-binding Proteins AT3G56690 36.190 1.70e-116 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5444g00027 K14571 - gmx:100809594 1086.63