Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5444g00023 ATGCCGGTGAGGCAAATGAAAGAAAGCTCGGAGCACCATCTTGTGATCAAAACCCAATTGCAGAACTCCATAAATCCAGCGAAGAAAGCACCCAAAACGGTCCAAAATGGCAAAGGTCCACCACCTCAAGAACCTCACAACGCCAAACCCCATAGCCAGAGCCAACCTCCGCCTCCGGCAAAGAACAGAGGAAGAAGAAGGAGCCGAGGAGGCCGAAAGTCCGATCAAGGCGATGTTCCGATGAGACCCGCTTGTCGACCCTGCACTGTGGCTAACAAACCGCTATCAGAAAACCCGGGTCAGATTGTGGTATCAAGTACTGTAAATGGGCCTGTTGAAAATGGCGGCAACAACTCTTGTGATGTTGTGATGGGGTTTCCTACTTCAAGTAAATCTCTGAGCTTCGCTCCGAGGCCTGGATACGGACAAGTTGGGACAAAATGCATGGTGAAGGCCAACCATTTCTTTGCAGAGTTACCCGACAAGGACTTGAATCAGTATGATGTCACTATTACCCCAGAAGTGTCGTCTAGAACAGTAAACAGGGCCATTATGGCGGAACTCGTGAGACTGTACAAAGAGTCTGACTTGGGGATGAGACTTCCTGCATATGATGGCAGAAAAGGCCTGTACACAGCAGGGGAGCTTCCCTTTGCTTGGAGAGAGTTTAAAATTAAGCTTGTAGATGAAGACGATGGAGTTAATGGTCCCAAAAGGGAAAGAGAATACAAAGTGGTGATAAAGTTTGTTGCTCGGGCAAACTTGCATCACTTGGGCCAGTTTCTAGCTGGTAAGCGAGCCGATGCTCCGCAGGAAGCACTTCAGATTCTTGACATTGTACTAAGAGAGCTATCAACTAAAAGGTTTTGCCCCATTGGGAGGTCTTTCTTTTCACCCCATATAAGAACACCTCAAAGGCTTGGGGAGGGATTGGAATCATGGTGTGGATTTTACCAGAGCATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCCTCAGCTGCGTTTATTGAGCCTCTTCCTGTAGTGGAATTTGTTGGTCAGCTGTTAGGAAAAGATGTGTTGTCAAGGCCATTGTCTGATGCTGATCGTGTAAAGATTAAGAAAGGGCTTAGAGGGGTCAAAGTTGAAGTAACACACAGAGGGAGTGTACGAAGAAAATATCGCGTTTCAGGGTTGACTTCTCAACCAACAAGAGAACTTGTGTTTCCTGTTGATGACAACTCAACTATGAAATCAGTAGTTGAGTACTTCCAAGAGATGTATGGTTTCACTATTCAGCATACTCACCTACCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCGAACTATTTGCCTATGGAGGCATGCAAGATTGTTGAGGGGCAACGGTATACAAAAAGGCTGAACGAGAAGCAAATTACTGCTTTGCTGAAAGTTACTTGTCAGAGACCCCGTGATCGGGAAAATGACATTTTGCGGACCATTCAACATAATGCTTATGATCAAGATCCTTATGCAAAGGAGTTTGGGATTAAGATCAGTGAAAAATTAGCTTCTGTTGAAGCACGAATTCTTCCTGCCCCATGGTTGAAATATCATGACACTGGTAAAGAAAAGAACTGCTTACCCCAAGTTGGTCAGTGGAACATGATGAACAAGAAAATGATCAATGGGATGACTGTTAGCCGGTGGGCATGCATAAATTTTTCACGAAATGTGCAAGACAGTGTTTCTCGCAGTTTTTGTAGTGAACTTGCCCAGATGTGTCAAGTATCTGGCATGGAATTTAATCCGGAGCCTGTTATCCCAATATATAATGCCAAGCCTGAGCAGGTAGAGAAGGCTTTAAAGCATGTTTATCATGTTTCGATGAATAAAACCAAGGGAAAGGAATTAGAGCTTTTATTAGCAATATTGCCTGACAACAACGGCTCTCTTTATGGTGATCTCAAGCGAATTTGTGAAACTGACCTTGGTTTAATTTCTCAATGCTGCCTCACTAAGCATGTCTTTAAGATCACTAAACAGTATCTGGCTAATGTGTCTCTGAAGATCAATGTTAAGATGGGAGGCAGAAACACTGTTCTTCTTGATGCTATAAGCTGCAAAATACCACTGGTCAGTGACATTCCAACAATAATATTTGGAGCAGATGTTACACACCCTGAAAATGGAGAAGATTCCAGTCCCTCAATAGCAGCTGTAGTGGCCTCCCAAGACTGGCCTGAAGTGACCAAATATGCTGGTTTAGTGTGTGCTCAAGCTCACAGACAGGAACTCATTCAAGATTTGTACAAAACTTGGCATGATCCTGTTCGTGGCACAGTTAGTGGTGGCATGATCCGAGACTTGTTGGTCTCCTTTAGGAAGGCAACAGGACAGAAGCCACTAAGGATAATATTTTACAGGGACGGTGTAAGTGAAGGGCAGTTTTATCAAGTTCTACTTTACGAGTTAGATGCAATCCGGAAGGCTTGTGCTTCCTTAGAGCCAAACTATCAACCTCCAGTAACTTTTATTGTTGTACAAAAAAGACATCACACTAGGTTGTTTGCAAACAACCACAGGGACAGGAGCAGCACAGATAAGAGTGGGAATATATTGCCTGGAACCGTTGTTGATTCTAAAATCTGTCATCCAACAGAATTTGATTTTTATCTCTGCAGTCATGCTGGTATTCAGGGGACAAGTCGGCCAGCTCATTATCATGTCCTGTGGGATGAAAACAACTTCACAGCAGATGGAATTCAGTCTTTGACAAACAATCTATGTTATACATATGCTAGGTGTACGCGTTCTGTATCTGTTGTTCCTCCGGCATATTATGCACATCTAGCAGCATTTCGGGCCCGTTTCTATATGGAGCCAGAGATGCAGGAGAATGGCTCTACTGGTGGTGGTAGCATGAGTCATGGTTCCAAAGCAACACGAGCAGCCGGAGAATGCGGGGTCCGGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGGGTAATGTTTTATTGTTAG 2997 0.4431 MPVRQMKESSEHHLVIKTQLQNSINPAKKAPKTVQNGKGPPPQEPHNAKPHSQSQPPPPAKNRGRRRSRGGRKSDQGDVPMRPACRPCTVANKPLSENPGQIVVSSTVNGPVENGGNNSCDVVMGFPTSSKSLSFAPRPGYGQVGTKCMVKANHFFAELPDKDLNQYDVTITPEVSSRTVNRAIMAELVRLYKESDLGMRLPAYDGRKGLYTAGELPFAWREFKIKLVDEDDGVNGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSTKRFCPIGRSFFSPHIRTPQRLGEGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRPLSDADRVKIKKGLRGVKVEVTHRGSVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTIQHNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHDTGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRNVQDSVSRSFCSELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSMNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAISCKIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSTGGGSMSHGSKATRAAGECGVRPLPALKENVKRVMFYC 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5444g00023 998 Gene3D - 521 694 - -
Pral5444g00023 998 CDD PAZ_argonaute_like 342 456 - -
Pral5444g00023 998 Pfam N-terminal domain of argonaute 147 281 IPR032474 -
Pral5444g00023 998 ProSiteProfiles Piwi domain profile. 631 952 IPR003165 GO:0003676
Pral5444g00023 998 SMART PAZ_2_a_3 347 479 IPR003100 GO:0005515
Pral5444g00023 998 Pfam Argonaute linker 2 domain 483 529 IPR032472 -
Pral5444g00023 998 Pfam Argonaute linker 1 domain 291 340 IPR014811 -
Pral5444g00023 998 MobiDBLite consensus disorder prediction 43 57 - -
Pral5444g00023 998 Gene3D paz domain 336 461 - -
Pral5444g00023 998 SMART Piwi_a_2 631 952 IPR003165 GO:0003676
Pral5444g00023 998 SMART DUF1785_2 290 342 IPR014811 -
Pral5444g00023 998 Gene3D - 700 998 IPR036397 GO:0003676
Pral5444g00023 998 FunFam protein argonaute 10-like 700 998 - -
Pral5444g00023 998 SUPERFAMILY Ribonuclease H-like 621 952 IPR012337 -
Pral5444g00023 998 MobiDBLite consensus disorder prediction 15 30 - -
Pral5444g00023 998 MobiDBLite consensus disorder prediction 1 96 - -
Pral5444g00023 998 FunFam Argonaute 10 521 694 - -
Pral5444g00023 998 Pfam PAZ domain 369 473 IPR003100 GO:0005515
Pral5444g00023 998 FunFam Protein argonaute-2 336 462 - -
Pral5444g00023 998 Pfam Mid domain of argonaute 540 617 IPR032473 -
Pral5444g00023 998 CDD Piwi_ago-like 501 951 IPR045246 -
Pral5444g00023 998 SUPERFAMILY PAZ domain 337 497 IPR036085 GO:0005515
Pral5444g00023 998 ProSiteProfiles PAZ domain profile. 343 457 IPR003100 GO:0005515
Pral5444g00023 998 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 123 953 - -
Pral5444g00023 998 Pfam Piwi domain 632 951 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5444g00023 Pral-Chr5444 205485 215670 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5444g00023 1 998 Eukaryotic Initiation Factors Gene Family AT5G43810 81.460 0.0 1677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5444g00023 K11593 - qsu:111993907 1842.78