Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5444g00018 ATGAATCAGGTGAAGGAGGAGATTATTATGGAGGCGACCACCACCATGGCTGCTCCACTGCCAATGGAGGGGCTTCACGAAGCTGGTCCACCGCCGTTTCTGACAAAAACATACGACATCGTCGACGATGTTTCCACCAACCACATAATTTCGTGGAGCCGAGGTAACAATAGTTTCGTTGTCTGGGATCCACAGTCTTTCTCCATGAGCCTCCTTCCCAGATTCTTCAAACACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACCTATGGATTCAGAAAGGTTGATCCAGATAGATGGGAATTTGCCAATGAAGGGTTTTTGAGAGGACAAAAGCATCTTCTGAAGAACATAAGGAGAAAGAAAACACCTCAACAACAACAACAGCAACATCATAATCATCATCATCAAGCTCTAGATCCATGCGTGGAAGTAGGGAGGTTCGGGCTCGACGGAGAGATCAACCGGCTCCGGCGAGACAAGCAGGTTCTCATGCTGGAACTGGTAAAACTCAGACAACAACAACAAAATGCTAGAACCCGCCTTCAACAAATGGAATGTAGGCTCAAGAAAACCGAACAGAAGCAGCAGCAAATGATGAATTTCTTAGCTAGAGCTATGCAAAACCCTAACTTTGTTCAGCAGTTAGTTCAGAAGAAAGAATGGAAGAAGGAACTTGAAGAAGCAATTTCACACAAAAGAAGAAGAACTATCGATCAAGGACCTAGTAATCGTGGTAATGTTGAGTTCATGGGCCAATTAGAATGCCCAGATTTCGTTGAACTTGAAGATAATATTATTGCTGCTGATGATCATGCTGCTCAGGATTTGGATTTGATTGGAAAGTTAGAGGAAGAACATCATAATGAGGTTGTCCAAGTTGGAAGTGAAAATATTAATAATAGAGAGAAAGAGATTGATGATCAAGTGTTTTGGCAAGACTTGTTGGACGAGGATATTGAAGAAGTTGTACGAGGCTTCGAGGAAGACGAAGAAGATGTTGATGTGTTGGCCGAACAACTTGGTTATTTAGCCTCTAATAATCGTCCTCCTCCGTAA 1062 0.4294 MNQVKEEIIMEATTTMAAPLPMEGLHEAGPPPFLTKTYDIVDDVSTNHIISWSRGNNSFVVWDPQSFSMSLLPRFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKNIRRKKTPQQQQQQHHNHHHQALDPCVEVGRFGLDGEINRLRRDKQVLMLELVKLRQQQQNARTRLQQMECRLKKTEQKQQQMMNFLARAMQNPNFVQQLVQKKEWKKELEEAISHKRRRTIDQGPSNRGNVEFMGQLECPDFVELEDNIIAADDHAAQDLDLIGKLEEEHHNEVVQVGSENINNREKEIDDQVFWQDLLDEDIEEVVRGFEEDEEDVDVLAEQLGYLASNNRPPP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5444g00018 353 Gene3D - 25 124 IPR036388 -
Pral5444g00018 353 FunFam Heat shock transcription factor 1 26 123 - -
Pral5444g00018 353 Coils Coil 155 196 - -
Pral5444g00018 353 PRINTS Heat shock factor (HSF) domain signature 33 56 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5444g00018 353 PRINTS Heat shock factor (HSF) domain signature 84 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5444g00018 353 PRINTS Heat shock factor (HSF) domain signature 71 83 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5444g00018 353 ProSitePatterns HSF-type DNA-binding domain signature. 72 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5444g00018 353 SMART hsfneu3 29 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5444g00018 353 Pfam HSF-type DNA-binding 33 122 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral5444g00018 353 SUPERFAMILY "Winged helix" DNA-binding domain 29 122 IPR036390 -
Pral5444g00018 353 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 245 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5444g00018 Pral-Chr5444 108900 111612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5444g00018 7 349 HSF AT3G22830 54.301 3.37e-128 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral5444g00018 HSF_DNA-bind 6.1e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5444g00018 K09419 - gmx:100809515 413.305