Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5444g00003 ATGAACGCCGGCACCGCCACCTTCCGCTCCATTCTCGACAAACCCCTCAGTCAGCTCACTGAGGATGACATTTCCCAGCTCACCCGTGAAGATTGTCGCAGGTTCCTCAAAGAAAAAGGAATGCGTCGGCCTTCTTGGAACAAATCGCAGGCGATCCAGCAAGTTATTTCCCTCAAAGCTTTGCTCGACCCAGCTGACGACGATTCCGGCACCGGACCCATACGGAGATTCCCTTTTGTTCCCGCTCAAGAAAATACCCCACCTGATAATCTAGATGTGACTGGTAGCGGCAGCGGCGGCGGCGGCGGCGCTATTGTCGCCGGAGCTGAGGCGACATCGAATGGGCCGTCTGAGGAGCCGGCTTTCCAACCTGCCGAAGAACTTCCCAAATCTGTGTCATCTGGAGAGAAACCAACTAACATTGAAACAAATGAGAAGGTCGTCAGTCCCAGAGTTACTTATTGTGGTTACAGAGAGTGTGCAACTAGTGGGCCTATTGGGCAAATGACAATTTTCTATTGCGGTAAGGTGAATGTGTATGATGGGGTGCCGCCTGATAAGCCATATGTGGATTTGCAGGCACGGGCAATCATGCAGCTTGCAGCAAGTCCCATCTATATACCTCAAGATGAACCATTCAAAAGAAGTACATCAGTCTGGCCTTGTCATTTACAGATGGACAAAGATATACTTGTCCCAATTGATGGCACAATCTCTCAGTTTTCTCAAGCGGAGAAGACGGTGGAGTATCCTTTGCATTACCGGGAGAAGGGGAGCACAGCTCGTGATTCTGATGTAGATGGTCAAGCAAGCAGGAAAGTGTCATTGCAGCGATATTTAGAAAAGCGAAAGGACAGGGGAAGATTAAAGAGCAAGAAATTTACGGGAGTAACTTCTTCTAACATGGAAATGTATTTCAGTCATCAAGTGAAGGCCCATGCCTCAAATGGGAATTCAAGCCGCAGTAGCACAAGCTCTCCGCCACAGCCAAGGCTGCCTCAAGCTTCTGGTGGCTCAGCTGACAACCAGCCAAAGATTGCCCTTCCTGTTGATCTCAATCACAAAGATTTTCAAGAGTGCTAA 1083 0.4922 MNAGTATFRSILDKPLSQLTEDDISQLTREDCRRFLKEKGMRRPSWNKSQAIQQVISLKALLDPADDDSGTGPIRRFPFVPAQENTPPDNLDVTGSGSGGGGGAIVAGAEATSNGPSEEPAFQPAEELPKSVSSGEKPTNIETNEKVVSPRVTYCGYRECATSGPIGQMTIFYCGKVNVYDGVPPDKPYVDLQARAIMQLAASPIYIPQDEPFKRSTSVWPCHLQMDKDILVPIDGTISQFSQAEKTVEYPLHYREKGSTARDSDVDGQASRKVSLQRYLEKRKDRGRLKSKKFTGVTSSNMEMYFSHQVKAHASNGNSSRSSTSSPPQPRLPQASGGSADNQPKIALPVDLNHKDFQEC 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5444g00003 360 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 9 303 IPR040390 -
Pral5444g00003 360 ProSiteProfiles Tify domain profile. 162 197 IPR010399 -
Pral5444g00003 360 MobiDBLite consensus disorder prediction 311 341 - -
Pral5444g00003 360 SMART tify_2 162 203 IPR010399 -
Pral5444g00003 360 MobiDBLite consensus disorder prediction 109 138 - -
Pral5444g00003 360 MobiDBLite consensus disorder prediction 311 360 - -
Pral5444g00003 360 Pfam Jas motif 269 286 IPR018467 -
Pral5444g00003 360 Pfam tify domain 168 202 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5444g00003 Pral-Chr5444 33932 39636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5444g00003 1 315 Tify Gene Family AT4G14720 45.820 1.37e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pral5444g00003 tify 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5444g00003 - - pcin:129296496 618.616